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Build # 18415959536

Build Type

Pull #119

github

Committed by dpark01

Commit Message

Make plotting and metrics code robust to zero-count data

Fix three functions to handle cases where barcodes have zero reads:

1. plot_read_counts(): Check for positive values before setting log
   scale to avoid matplotlib warnings when all data is zero

2. plot_sorted_curve(): Handle division by zero when calculating
   fractions for pools with 0 total reads

3. write_barcode_metrics_for_pools(): Use ternary expressions to
   safely handle division by zero when calculating percentages

All functions now produce valid outputs and log warnings when
encountering zero counts, allowing the 3-barcode demultiplexing
workflow to complete successfully even when some barcodes/pools
have no matching reads.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

Pull Request Pull Request #119: WIP swiftseq demux integration

Run Details

431 of 1237 new or added lines in 8 files covered. (34.84%)

8 existing lines in 1 file now uncovered.

3238 of 5531 relevant lines covered (58.54%)

0.59 hits per line