broadinstitute / viral-core
69%
master: 69%

LAST BUILD BRANCH: v2.5.10
DEFAULT BRANCH: master
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LAST BUILD ON BRANCH dp-demux
branch: dp-demux
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coverage: 69.19% (+0.4%) from 68.76%
19725307611

Pull #137

github

web-flow 
Merge branch 'master' into dp-demux
Pull Request #137: Emit zero BAMs when FASTQ barcodes don't match samplesheet

2 of 6 new or added lines in 1 file covered. (33.33%)

2 existing lines in 1 file now uncovered.

4177 of 6037 relevant lines covered (69.19%)

0.69 hits per line

Relevant lines Covered
6037 RELEVANT LINES 4177 COVERED LINES
0.69 HITS PER LINE
Source Files on dp-demux
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
19725307611 dp-demux Merge branch 'master' into dp-demux Pull #137 web-flow github
69.19
19725307751 dp-demux Merge e659007b3 into 9d5de9f96 Pull #137 web-flow github
69.35
19725297126 dp-demux Emit zero BAMs when FASTQ barcodes don't match samplesheet When splitcode_demux_fastqs receives FASTQs with barcodes that don't match any samplesheet entry (or empty FASTQs), it now emits zero BAM files instead of creating an empty BAM. This alig... push dpark01 github
69.37
19725302967 dp-demux Merge bf82e7378 into 9d5de9f96 Pull #137 web-flow github
69.35
19723885077 dp-demux Parallelize Picard FastqToSam conversions in splitcode_demux_fastqs Performance optimization for 3-barcode demultiplexing workflow. Changes: - Add run_picard_fastq_to_sam_for_splitcode_demux() helper function for ProcessPoolExecutor compatibil... Pull #136 dpark01 github
68.87
19722026750 dp-demux Handle N bases in barcode_2 for 3-barcode demux filtering When FASTQ barcode headers contain N bases (sequencer no-calls), the second filtering step in splitcode_demux_fastqs was using exact string matching (==) which would fail to match the samp... Pull #135 dpark01 github
69.16
19722032944 dp-demux Merge c1927eb27 into 63978a735 Pull #135 web-flow github
68.97
19716644703 dp-demux Merge branch 'master' into dp-demux Pull #134 web-flow github
69.18
19716627924 dp-demux Merge 1eb52faaf into 686fbe70e Pull #134 web-flow github
69.18
19716620336 dp-demux Fix i5 reverse complement for 3-barcode demux Fixes #133 The splitcode_demux_fastqs function was failing to demultiplex 3-barcode samples when the i5 barcode (barcode_2) in DRAGEN FASTQ headers was reverse-complemented relative to the sampleshee... push dpark01 github
68.98
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