broadinstitute / viral-core

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master: 69%

LAST BUILD ON BRANCH v2.2.1

branch: v2.2.1

CHANGE BRANCH

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• v2.2.1
• ct-add-fgbio
• ct-add-ncbi-datasets
• ct-add-read-filtering-cli-cmd
• ct-align_and_fix_without_supplementary_alignments
• ct-barcode-helper-ntc-counting
• ct-barcode-i5-single-index-bugfix
• ct-bugfix-idxstats-fns
• ct-bugfix-minimap2_idxstats
• ct-bump-baseimage
• ct-bump-baseimage-0.2.3
• ct-bump-pysam
• ct-bump-pytest
• ct-bump-python-version
• ct-bump-viral-baseimage-0.2.4
• ct-gh-actions-jvm-heap-decrease
• ct-ghactions-update-ubuntu
• ct-github-actions
• ct-help-text-correction
• ct-option-to-include-dup-reads-in-filtering
• ct-set-default-threads
• ct-swiftseq-demux-integration
• ct-update-baseimage
• ct-update-docker-base
• ct-update-docker-mem-calc
• ct-update-testing
• ct-version-read-fix
• docs
• dp-dev
• dp-docs
• dp-fasta-handling
• dp-fix-fastqc
• ll-add_swiftseq_demux
• master
• v2.2.0
• v2.2.3
• v2.3.0
• v2.3.1
• v2.3.2
• v2.3.3
• v2.3.4
• v2.3.5
• v2.3.6
• v2.4.0
• v2.4.1
• v2.4.2
• v2.4.3

bump pysam pin to >=0.20.0 (#81)