broadinstitute / viral-core
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Merge pull request #154 from broadinstitute/dp-downsample

Fix memory allocation in downsample_bams when processing fewer files than CPUs

2 of 2 new or added lines in 1 file covered. (100.0%)

1 existing line in 1 file now uncovered.

4427 of 6326 relevant lines covered (69.98%)

0.7 hits per line

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6326 RELEVANT LINES 4427 COVERED LINES
0.7 HITS PER LINE
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Builds Branch Commit Type Ran Committer Via Coverage
20632685309 master Merge pull request #154 from broadinstitute/dp-downsample Fix memory allocation in downsample_bams when processing fewer files than CPUs push web-flow github
69.98
20554313081 master Merge pull request #153 from broadinstitute/dp-fix-mvicuna-error-swallow Fix rmdup_mvicuna_bam silently swallowing mvicuna failures push web-flow github
70.0
20464036027 master Merge pull request #152 from broadinstitute/dp-demux Add metadata output to splitcode_demux_fastqs and make samplesheet optional push web-flow github
70.01
20447147980 master Merge pull request #151 from broadinstitute/dp-demux Add --append_run_id parameter to illumina_metadata command push web-flow github
69.66
20391150536 master Merge pull request #149 from broadinstitute/dp-minimap Add threading to bam2fq_pipe and auto-compression to idxstats output push web-flow github
69.65
20387940973 master Merge pull request #148 from broadinstitute/dp-minimap Add Minimap2.idxstats() with PAF-based streaming for faster read counting push web-flow github
69.79
20231469723 master Merge pull request #143 from broadinstitute/dp-fastq-performance Replace Picard FastqToSam with samtools import for faster FASTQ to BAM conversion push web-flow github
69.34
19792226372 master Merge pull request #141 from broadinstitute/dp-novaseq-x-detection Add machine detection for NovaSeq X Plus and NextSeq 1000/2000 P1 push web-flow github
69.44
19772339157 master Merge pull request #140 from broadinstitute/dp-splitcode Add append_run_id support to splitcode_demux_fastqs and make lane optional push web-flow github
69.38
19725936358 master Merge pull request #138 from broadinstitute/fix-merge-queue-docker-tags Fix merge queue Docker tag failures push web-flow github
69.31
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