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broadinstitute / viral-core
68%

Build:
DEFAULT BRANCH: master
Repo Added 10 Sep 2019 08:19PM UTC
Files 24
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LAST BUILD ON BRANCH master
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  • master
  • ct-add-fgbio
  • ct-add-ncbi-datasets
  • ct-add-read-filtering-cli-cmd
  • ct-align_and_fix_without_supplementary_alignments
  • ct-barcode-helper-ntc-counting
  • ct-barcode-i5-single-index-bugfix
  • ct-bugfix-idxstats-fns
  • ct-bugfix-minimap2_idxstats
  • ct-bump-baseimage
  • ct-bump-baseimage-0.2.3
  • ct-bump-pysam
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  • ct-gh-actions-jvm-heap-decrease
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  • ct-help-text-correction
  • ct-option-to-include-dup-reads-in-filtering
  • ct-set-default-threads
  • ct-swiftseq-demux-integration
  • ct-update-baseimage
  • ct-update-docker-base
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  • dp-fasta-handling
  • ll-add_swiftseq_demux
  • v2.2.0
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08 Nov 2025 01:28PM UTC coverage: 68.273% (+2.5%) from 65.78%
19193698996

push

github

web-flow
Merge pull request #119 from broadinstitute/ct-swiftseq-demux-integration

Add demultiplexing of 3-barcode sheets with splitcode

1059 of 1372 new or added lines in 8 files covered. (77.19%)

8 existing lines in 1 file now uncovered.

3867 of 5664 relevant lines covered (68.27%)

0.68 hits per line

Relevant lines Covered
Build:
Build:
5664 RELEVANT LINES 3867 COVERED LINES
0.68 HITS PER LINE
Source Files on master
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  • List 24
  • Changed 2
  • Source Changed 2
  • Coverage Changed 2
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
19193698996 master Merge pull request #119 from broadinstitute/ct-swiftseq-demux-integration Add demultiplexing of 3-barcode sheets with splitcode push 08 Nov 2025 01:40PM UTC web-flow github
68.27
18294405114 master Merge pull request #121 from broadinstitute/dp-dev Add CLAUDE.md and update DEVELOPMENT_NOTES.md push 06 Oct 2025 09:16PM UTC web-flow github
65.78
14341135925 master Merge pull request #118 from broadinstitute/ct-ghactions-update-ubuntu GitHub Actions runner ubuntu upgrade 20.04 -> 24.04 push 08 Apr 2025 10:19PM UTC web-flow github
66.02
13077418638 master viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 (#117) * viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 * s/conda create/mamba create/ push 31 Jan 2025 05:35PM UTC web-flow github
66.04
12300320966 master Add splitcode to requirements (#115) push 12 Dec 2024 04:20PM UTC web-flow github
66.04
11734937038 master update calc_mem.py script used to obtain within-container memory limit for cgroup v2 (#114) * update calc_mem.py script used to obtain within-container memory limit for cgroup v2 update calc_mem.py script used to obtain within-container memory... push 08 Nov 2024 02:35AM UTC web-flow github
66.04
11613083184 master add NCBI datasets to conda dependencies (#113) add NCBI datasets to conda dependencies, for downloading viral genomes and associated metadata push 31 Oct 2024 01:53PM UTC web-flow github
66.06
10951590118 master Merge pull request #112 from broadinstitute/dp-fasta-handling align_and_fix: tolerate whitespace in headers push 20 Sep 2024 01:39AM UTC web-flow github
65.69
10939462395 master Merge pull request #111 from broadinstitute/dp-fasta-handling make samtools happy with spaces in fasta headers push 19 Sep 2024 10:57AM UTC web-flow github
66.01
10929556082 master Merge pull request #110 from broadinstitute/dp-fasta-handling handle spaces in fasta headers push 18 Sep 2024 10:43PM UTC web-flow github
65.96
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