broadinstitute / viral-core
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coverage: 68.273% (+2.5%) from 65.78%
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Merge pull request #119 from broadinstitute/ct-swiftseq-demux-integration

Add demultiplexing of 3-barcode sheets with splitcode

1059 of 1372 new or added lines in 8 files covered. (77.19%)

8 existing lines in 1 file now uncovered.

3867 of 5664 relevant lines covered (68.27%)

0.68 hits per line

Relevant lines Covered
5664 RELEVANT LINES 3867 COVERED LINES
0.68 HITS PER LINE
Source Files on master

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
19193698996 master Merge pull request #119 from broadinstitute/ct-swiftseq-demux-integration Add demultiplexing of 3-barcode sheets with splitcode push web-flow github
68.27
18294405114 master Merge pull request #121 from broadinstitute/dp-dev Add CLAUDE.md and update DEVELOPMENT_NOTES.md push web-flow github
65.78
14341135925 master Merge pull request #118 from broadinstitute/ct-ghactions-update-ubuntu GitHub Actions runner ubuntu upgrade 20.04 -> 24.04 push web-flow github
66.02
13077418638 master viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 (#117) * viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 * s/conda create/mamba create/ push web-flow github
66.04
12300320966 master Add splitcode to requirements (#115) push web-flow github
66.04
11734937038 master update calc_mem.py script used to obtain within-container memory limit for cgroup v2 (#114) * update calc_mem.py script used to obtain within-container memory limit for cgroup v2 update calc_mem.py script used to obtain within-container memory... push web-flow github
66.04
11613083184 master add NCBI datasets to conda dependencies (#113) add NCBI datasets to conda dependencies, for downloading viral genomes and associated metadata push web-flow github
66.06
10951590118 master Merge pull request #112 from broadinstitute/dp-fasta-handling align_and_fix: tolerate whitespace in headers push web-flow github
65.69
10939462395 master Merge pull request #111 from broadinstitute/dp-fasta-handling make samtools happy with spaces in fasta headers push web-flow github
66.01
10929556082 master Merge pull request #110 from broadinstitute/dp-fasta-handling handle spaces in fasta headers push web-flow github
65.96
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