broadinstitute / viral-core / 20561670383

Builds Branch Commit Type Ran Committer Via Coverage
20561670383 v2.5.17 Merge pull request #153 from broadinstitute/dp-fix-mvicuna-error-swallow Fix rmdup_mvicuna_bam silently swallowing mvicuna failures push web-flow github
70.0
20554313081 master Merge pull request #153 from broadinstitute/dp-fix-mvicuna-error-swallow Fix rmdup_mvicuna_bam silently swallowing mvicuna failures push web-flow github
70.0
20554005305 dp-fix-mvicuna-error-swallow Fix rmdup_mvicuna_bam silently swallowing mvicuna failures When mvicuna fails (e.g., OOM killed with SIGKILL), the exception was caught and logged but not re-raised. This caused the function to continue executing, producing an empty output BAM fi... Pull #153 dpark01 github
70.0
20464371253 v2.5.16 Merge pull request #152 from broadinstitute/dp-demux Add metadata output to splitcode_demux_fastqs and make samplesheet optional push web-flow github
70.01
20464036027 master Merge pull request #152 from broadinstitute/dp-demux Add metadata output to splitcode_demux_fastqs and make samplesheet optional push web-flow github
70.01
20463699069 dp-demux Add metadata output to splitcode_demux_fastqs and make samplesheet optional in illumina_metadata Task 1: Add --out_meta_by_sample and --out_meta_by_filename to splitcode_demux_fastqs - Generates sample metadata JSONs with lane from FASTQ filename... Pull #152 dpark01 github
70.01
20447147980 master Merge pull request #151 from broadinstitute/dp-demux Add --append_run_id parameter to illumina_metadata command push web-flow github
69.66
20446956959 gh-readonly-queue/master/pr-151-5e195600862e1e41db04b8c1e3f9524c1dc2805d Merge pull request #151 from broadinstitute/dp-demux Add --append_run_id parameter to illumina_metadata command push web-flow github
69.85
20446956946 gh-readonly-queue/master/pr-151-5e195600862e1e41db04b8c1e3f9524c1dc2805d Merge pull request #151 from broadinstitute/dp-demux Add --append_run_id parameter to illumina_metadata command push web-flow github
69.78
20446705465 dp-demux Add --append_run_id parameter to illumina_metadata command Fixes #150. The illumina_metadata command now supports --append_run_id to append flowcell ID and lane to library IDs in metadata output, matching the behavior of illumina_demux and splitc... Pull #151 dpark01 github
69.85
20391266166 v2.5.14 Merge pull request #149 from broadinstitute/dp-minimap Add threading to bam2fq_pipe and auto-compression to idxstats output push web-flow github
69.76
20391150536 master Merge pull request #149 from broadinstitute/dp-minimap Add threading to bam2fq_pipe and auto-compression to idxstats output push web-flow github
69.65
20390484207 dp-minimap Add threading to bam2fq_pipe and auto-compression to idxstats output - Add optional threads parameter to samtools bam2fq_pipe() with -@ flag - Use 4 threads for BAM decompression in minimap2.idxstats() - Replace open() with util.file.open_or_gzop... Pull #149 dpark01 github
69.81
20387940973 master Merge pull request #148 from broadinstitute/dp-minimap Add Minimap2.idxstats() with PAF-based streaming for faster read counting push web-flow github
69.79
20387972435 v2.5.13 Merge pull request #148 from broadinstitute/dp-minimap Add Minimap2.idxstats() with PAF-based streaming for faster read counting push web-flow github
69.81