broadinstitute / viral-core / 18415959536

Builds Branch Commit Type Ran Committer Via Coverage
18415959536 ct-swiftseq-demux-integration Make plotting and metrics code robust to zero-count data Fix three functions to handle cases where barcodes have zero reads: 1. plot_read_counts(): Check for positive values before setting log scale to avoid matplotlib warnings when all data ... Pull #119 dpark01 github
58.54
18414971484 ct-swiftseq-demux-integration Fix splitcode demux crash when pools have 0 reads Handle the case where splitcode processes 0 reads for a pool, which results in an empty tag_qc array in the summary JSON. Previously this would crash with KeyError: 'tag' when trying to create a D... Pull #119 dpark01 github
58.2
18312460816 ct-swiftseq-demux-integration Merge 434dbf232 into d3ad25d5f Pull #119 web-flow github
58.7
18294405114 master Merge pull request #121 from broadinstitute/dp-dev Add CLAUDE.md and update DEVELOPMENT_NOTES.md push web-flow github
65.78
18289302899 dp-dev Add CLAUDE.md for AI coding assistant guidance Add comprehensive documentation for Claude Code (and other AI assistants) to efficiently work in this repository, including: - Docker-centric development workflow - Testing commands and pytest config... Pull #121 dpark01 github
66.04
17161284959 v2.4.3 Merge pull request #120 from broadinstitute/ct-update-docker-base Update docker baseimage viral-baseimage to 0.3.0 push web-flow github
65.78
17161284885 v2.4.3 Merge pull request #120 from broadinstitute/ct-update-docker-base Update docker baseimage viral-baseimage to 0.3.0 push web-flow github
66.02
17160770756 ct-update-docker-base python 3.10->3.12 Pull #120 tomkinsc github
66.08
17158567492 ct-swiftseq-demux-integration prime matplotlib font cache during docker build Pull #119 tomkinsc github
58.7
17158568174 ct-swiftseq-demux-integration Merge ace241dd8 into 3d0418fae Pull #119 web-flow github
58.69
17158547963 ct-swiftseq-demux-integration Merge 2fdd5263b into 3d0418fae Pull #119 web-flow github
58.7
17000698803 ct-swiftseq-demux-integration refactor tabular reporting output of read counts following inner-barcode demux refactor tabular reporting output of read counts following inner-barcode demux, move csv creation logic from plot_sorted_curve() to a new function, write_barcode_metri... push tomkinsc github
58.7
16307915903 ct-swiftseq-demux-integration add illumina-interop to conda requirements push tomkinsc github
58.62
15840842085 ct-swiftseq-demux-integration ensure exceptions are propagated upon exit from custom sqlite3 connection context manager push tomkinsc github
59.04
15840819306 ct-swiftseq-demux-integration viral-baseimage to 0.3.0 push tomkinsc github
58.64