openvax / topiary
90%
master: 90%

LAST BUILD BRANCH: v5.16.2
DEFAULT BRANCH: master
Repo Added
Files 35
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH pvacseq-loader
branch: pvacseq-loader
CHANGE BRANCH
x

coverage: 89.87% (+0.2%) from 89.625%
25885529254

Pull #167

github

web-flow 
Merge 0cb749317 into a38d20687
Pull Request #167: Add pVACseq report loader (closes #94)

269 of 302 new or added lines in 5 files covered. (89.07%)

4551 of 5064 relevant lines covered (89.87%)

2.7 hits per line

Relevant lines Covered
5064 RELEVANT LINES 4551 COVERED LINES
2.7 HITS PER LINE
Source Files on pvacseq-loader

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
25885529254 pvacseq-loader Merge 0cb749317 into a38d20687 Pull #167 web-flow github
89.87
25885527536 pvacseq-loader Bump version to 5.16.0 push iskandr github
89.87
25884991991 pvacseq-loader pvacseq: flesh out detect_pvacseq_format docstring + return-type hints Two surface-quality fixes from another review pass: - `detect_pvacseq_format` had a 5-word docstring for a public export ("Return 'aggregated', 'all_epitopes', or None.") —... Pull #167 iskandr github
89.87
25882966575 pvacseq-loader docs/pvacseq: drop broken concat example, fix kind_support reference Three issues found in the last review pass of `docs/pvacseq.md`: 1. The re-scoring section's `concat([r, fresh_result])` example referenced an undefined variable (`fresh_res... Pull #167 iskandr github
89.87
25876601215 pvacseq-loader Docs: dedicated pVACseq import guide New `docs/pvacseq.md` (~260 lines) covers the full read_pvacseq surface end-to-end: - What pVACseq is, why import its output (re-score / compare / re-rank / combine MHC-I + MHC-II). - The two TSV flavors (a... Pull #167 iskandr github
89.87
25876365950 pvacseq-loader Merge d9e63159c into a38d20687 Pull #167 web-flow github
89.87
25876363815 pvacseq-loader DSL: harden walker, fix IsIn empty-df fragility, fill api.md gaps Three fixes from the review nudge after the prior "clean stopping point" claim — all real, not nits. 1. `IsIn.eval` empty-DataFrame branch built a Series from a zero-length boo... push iskandr github
89.87
25875561027 pvacseq-loader DSL: review polish — drop dead code, simplify repr, harden tests Five tactical cleanups from the latest review of PR #167: - `IsIn.__init__` had `isinstance(values, float) and math.isnan(values)` as a fallback scalar-detection arm. `float` is... Pull #167 iskandr github
89.87
25872231615 pvacseq-loader DSL: class_i / class_ii shortcuts + ranking docs catch-up - `topiary.class_i` and `topiary.class_ii` — pre-built `IsIn` nodes referencing the `mhc_class` column. Compose with any other DSL node: `apply_filter(df, class_i & (Affinity.value <=... Pull #167 iskandr github
89.84
25870749548 pvacseq-loader DSL: native categorical equality for string columns Adds an `IsIn` DSL node plus `Column.eq(value)` / `Column.ne(value)` / `Column.isin(values)` methods so non-numeric columns (mhc_class, source, gene, ...) are filterable natively in the DSL with... Pull #167 iskandr github
89.79
See All Builds (269)