openvax / topiary

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LAST BUILD ON BRANCH v5.14.1

branch: v5.14.1

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• v5.14.1
• add-agents-md
• add-cache-sharding
• add-cached-predictor
• add-model-colon-kind-syntax
• add-netmhc-cache-loaders
• add-protected-tissues-scope
• add-self-proteome-nearest
• antigen-fragment
• bare-ident-brackets
• best-allele-aggregation
• cached-predictor-cli
• cached-predictor-vaxrank-polish
• chore/varcode-floor-122
• ci-caching
• cleanup-dsl-version-syntax
• codex/mhctools-3-7-compat
• codex/predict-wt-peptides
• combine-predictor-results
• csv-fasta-inputs
• dsl-extensions
• dsl-polish
• dsl-polish-v5.0.1
• dsl-refactor-v5
• eval-context-default-methods
• evaluate-scores-helper
• expression-data
• expression-dsl-v2
• feature/peptide-property-dsl
• filter-auto-aggregate
• fix-127-autowrap-test
• fix-165-backfill-value-from-score
• fix-biopython-dependency
• fix-deploy-python-selection
• improve-cli-errors
• inline-blosum62
• io-wide-v4.11
• lazy-varcode-imports
• lens-loader
• master
• multi-model-disambiguation
• openvax_switch
• peptide-provenance
• pirlygenes-5.1-expression-accessors
• plumb-kind-support
• pr-b-fragment-refactor
• promote-kind-aliases-public
• pvacseq-loader
• refactor-for-protein-sequences
• release-4.8.0
• restore-varcode-cli-parser-delegation
• shrink-cached-predictor-index
• test-audit-v4.10
• topiary-result
• v4.10.0
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• v4.11.1
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• v5.9.1

Build # 25701107980

Build Type

push

github

Committed by web-flow

Commit Message

Raise varcode floor to >=4.18.0 (#122) (#164)

varcode 4.18.0 dropped PyVCF3 from its runtime import path
(openvax/varcode#356). With this floor, fresh installs no longer
surface the rpy2 / embedded-R noise that motivated the issue.
Bump topiary to 5.14.1.

Coverage Stats

1 of 1 new or added line in 1 file covered. (100.0%)

4266 of 4759 relevant lines covered (89.64%)

2.69 hits per line