openvax / topiary

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LAST BUILD ON BRANCH v5.16.1

branch: v5.16.1

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• v5.16.1
• add-agents-md
• add-cache-sharding
• add-cached-predictor
• add-model-colon-kind-syntax
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• add-protected-tissues-scope
• add-self-proteome-nearest
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• fix-127-autowrap-test
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Build # 25923252267

Build Type

push

github

Committed by web-flow

Commit Message

Use pirlygenes 5.1 expression accessor; min-version gate (#171)

* Use pirlygenes 5.1 expression accessor; min-version gate

`tissue_expressed_gene_ids` and `available_tissues` switch from
`load_all_dataframes_dict()["pan-cancer-expression.csv"]` to the typed
`pirlygenes.pan_cancer_expression()` accessor introduced in pirlygenes
5.1.0. The 5.0.x data-strip had broken the dict-lookup path with a
KeyError; 5.1.0 restores the CSVs alongside the curated gene lists, and
the named accessor is the canonical handle.

`_check_pirlygenes` now also enforces pirlygenes>=5.1.0 so a stale
install surfaces a clear upgrade message rather than a downstream
AttributeError. pirlygenes remains optional — only CTA / tissue paths
require it.

* Test _check_pirlygenes rejects pre-5.1.0 versions

* Fix pirlygenes version gate tests and bump release

Coverage Stats

16 of 24 new or added lines in 2 files covered. (66.67%)

1 existing line in 1 file now uncovered.

4565 of 5082 relevant lines covered (89.83%)

2.69 hits per line