openvax / topiary

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master: 90%

LAST BUILD ON BRANCH v5.6.0

branch: v5.6.0

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• v5.6.0
• add-agents-md
• add-cache-sharding
• add-cached-predictor
• add-model-colon-kind-syntax
• add-netmhc-cache-loaders
• add-protected-tissues-scope
• add-self-proteome-nearest
• antigen-fragment
• bare-ident-brackets
• best-allele-aggregation
• cached-predictor-cli
• cached-predictor-vaxrank-polish
• chore/varcode-floor-122
• ci-caching
• cleanup-dsl-version-syntax
• codex/mhctools-3-7-compat
• codex/predict-wt-peptides
• combine-predictor-results
• csv-fasta-inputs
• dsl-extensions
• dsl-polish
• dsl-polish-v5.0.1
• dsl-refactor-v5
• eval-context-default-methods
• evaluate-scores-helper
• expression-data
• expression-dsl-v2
• feature/peptide-property-dsl
• filter-auto-aggregate
• fix-127-autowrap-test
• fix-165-backfill-value-from-score
• fix-biopython-dependency
• fix-deploy-python-selection
• improve-cli-errors
• inline-blosum62
• io-wide-v4.11
• lazy-varcode-imports
• lens-loader
• master
• multi-model-disambiguation
• openvax_switch
• peptide-provenance
• pirlygenes-5.1-expression-accessors
• plumb-kind-support
• pr-b-fragment-refactor
• promote-kind-aliases-public
• pvacseq-loader
• refactor-for-protein-sequences
• release-4.8.0
• restore-varcode-cli-parser-delegation
• shrink-cached-predictor-index
• test-audit-v4.10
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Build # 24430035065

Build Type

push

github

Committed by web-flow

Commit Message

Add CachedPredictor sharding — v5.6.0 (#133) (closes #128)

Final part of #128 — pluggable prediction sources reach feature-complete.

- concat([caches]) + from_directory(path) merge multiple CachedPredictors through the core (name, version) invariant.
- Overlap resolution: 'raise' (default) / 'last' / 'first' / callable(row_a, row_b) -> row.
- v5.6.0 bump accumulates #131 (vaxrank polish), #132 (NetMHC loaders), and this PR (sharding).

Closes #128.

Coverage Stats

45 of 45 new or added lines in 2 files covered. (100.0%)

3311 of 3752 relevant lines covered (88.25%)

2.65 hits per line