openvax / topiary

89%

master: 90%

LAST BUILD ON BRANCH expression-dsl-v2

branch: expression-dsl-v2

CHANGE BRANCH

x

Reset

• expression-dsl-v2
• add-agents-md
• add-cache-sharding
• add-cached-predictor
• add-model-colon-kind-syntax
• add-netmhc-cache-loaders
• add-protected-tissues-scope
• add-self-proteome-nearest
• antigen-fragment
• bare-ident-brackets
• best-allele-aggregation
• cached-predictor-cli
• cached-predictor-vaxrank-polish
• chore/varcode-floor-122
• ci-caching
• cleanup-dsl-version-syntax
• codex/mhctools-3-7-compat
• codex/predict-wt-peptides
• combine-predictor-results
• csv-fasta-inputs
• dsl-extensions
• dsl-polish
• dsl-polish-v5.0.1
• dsl-refactor-v5
• eval-context-default-methods
• evaluate-scores-helper
• expression-data
• feature/peptide-property-dsl
• filter-auto-aggregate
• fix-127-autowrap-test
• fix-165-backfill-value-from-score
• fix-biopython-dependency
• fix-deploy-python-selection
• improve-cli-errors
• inline-blosum62
• io-wide-v4.11
• lazy-varcode-imports
• lens-loader
• master
• multi-model-disambiguation
• openvax_switch
• peptide-provenance
• pirlygenes-5.1-expression-accessors
• plumb-kind-support
• pr-b-fragment-refactor
• promote-kind-aliases-public
• pvacseq-loader
• refactor-for-protein-sequences
• release-4.8.0
• restore-varcode-cli-parser-delegation
• shrink-cached-predictor-index
• test-audit-v4.10
• topiary-result
• v4.10.0
• v4.11.0
• v4.11.1
• v4.11.2
• v4.12.0
• v4.3.0
• v4.3.1
• v4.3.2
• v4.4.0
• v4.5.0
• v4.5.1
• v4.6.0
• v4.8.0
• v4.9.0
• v5.0.0
• v5.0.1
• v5.1.0
• v5.10.0
• v5.10.1
• v5.10.2
• v5.10.3
• v5.10.4
• v5.10.5
• v5.10.6
• v5.10.7
• v5.10.8
• v5.11.0
• v5.12.0
• v5.13.0
• v5.14.0
• v5.14.1
• v5.15.0
• v5.16.1
• v5.16.2
• v5.2.0
• v5.4.0
• v5.5.0
• v5.6.0
• v5.8.0
• v5.9.0
• v5.9.1

Build # 24229580333

Build Type

Pull #103

github

Committed by iskandr

Commit Message

Fix review issues: dead code, validation, docs, test coverage

- Remove dead kind_map block in Scope.__getattr__ (unreachable code)
- Validate Count chars non-empty (reject count(''))
- Export self_scope from __init__.py
- Update README.md, docs/ranking.md, docs/api.md, docs/index.md:
  replace all WT() references with wt. scope syntax, add len/count docs
- Add 16 tests: shuffled scope (parse, eval, differential, Python API,
  len, count, repr roundtrip), self scope (parse, eval, differential,
  Python API, roundtrip), edge cases (nested scope rejected,
  empty count rejected, lowercase count normalized, shuffled reserved)

Pull Request Pull Request #103: Expression DSL v2: scoped contexts, len, count, repr round-trips

Coverage Stats

392 of 423 new or added lines in 3 files covered. (92.67%)

1788 of 2014 relevant lines covered (88.78%)

2.66 hits per line