openvax / topiary
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Combine separate predictor results

440 of 486 new or added lines in 6 files covered. (90.53%)

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4954 of 5515 relevant lines covered (89.83%)

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Builds Branch Commit Type Ran Committer Via Coverage
26051642327 master Combine separate predictor results push web-flow github
89.83
25923192409 master Use pirlygenes 5.1 expression accessor; min-version gate (#171) * Use pirlygenes 5.1 expression accessor; min-version gate `tissue_expressed_gene_ids` and `available_tissues` switch from `load_all_dataframes_dict()["pan-cancer-expression.csv"]` ... push web-flow github
89.83
25885551465 master Add pVACseq report loader + DSL categorical equality (#167) Adds `topiary.read_pvacseq(path)` plus a DSL-side categorical-equality extension that vaxrank and other downstream consumers need to filter multi-class results elegantly. **Loader (`top... push web-flow github
89.87
25821572339 master test.sh: memory-aware pytest-xdist worker count Mirror the worker-cap logic from trufflepig/hitlist/tsarina/vaxrank so concurrent test runs across sibling repos can't fork-bomb the laptop. Picks min(cpu_reserve, available_RAM / PER_WORKER_GB), re... push iskandr github
89.62
25817634590 master Docs polish: move quick example, link proper nouns, strip PR-author voice - docs/index.md: move Quick example above Installation, swap the truncated BRAF placeholder for the full PRAME (UniProt P78395) sequence, simplify filter/sort to string... push iskandr github
89.62
25817453989 master Link proper nouns in Features list (NetMHCpan, MHCflurry, etc.) push iskandr github
89.62
25817421388 master Tighten Features list on docs index page push iskandr github
89.62
25811341902 master Backfill value from score for [0,1]-score predictor kinds (#165) (#166) * Backfill value from score for [0,1]-score predictor kinds (#165) `_format_prediction_df` now fills `value` from `score` wherever `value` is NaN. mhctools only populates `v... push web-flow github
89.62
25699481067 master Raise varcode floor to >=4.18.0 (#122) (#164) varcode 4.18.0 dropped PyVCF3 from its runtime import path (openvax/varcode#356). With this floor, fresh installs no longer surface the rpy2 / embedded-R noise that motivated the issue. Bump topiary t... push web-flow github
89.64
25686019425 master Peptide property DSL nodes (#95) (#163) * Add PeptideProperty DSL node for peptide-intrinsic properties (#95) Wires the existing topiary.properties registry into the ranking DSL so expressions like `Aromaticity.clip(lo=0, hi=3) + (-abs(Charge))`... push web-flow github
89.64
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