hammerlab / isovar

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master: 89%

LAST BUILD ON BRANCH v0.7.0

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• add-min-alt-rna-reads-cli-arg
• cli
• compute-mutated-offset-correctly
• count-all-alleles-at-locus
• death-to-namedtuples
• expose-flag-to-filter-mismatches-after-variant
• filter-mismatches-after-variant
• fix-assembly-and-add-min-alt-rna-reads
• fix-transcript-biotypes
• fix-variant-reading-into-intron
• increment-version
• isovar-logger
• isovar-up-version
• less-noisy-logging
• master
• refactor-translation-module
• remove-soft-clipped-bases
• renamed-args-to-cli-for-consistency
• revert-37-add-gene-column-to-dataframes
• sbkio-0-4-2
• small-fixes-to-tests-and-args
• the-worst-bug
• trim-N-from-read-sequence
• trim-variant-sequences-by-coverage-while-matching-to-reference
• use-assembly-and-trimming
• use-varcode-cli-for-loading-variants
• v0.0.2
• v0.0.3
• v0.1.0
• v0.5.1
• v0.7.0
• variant-sequence-combine-return-none

Build # 478

Build Type

push

travis-ci

Committed by web-flow

Commit Message

Merge pull request #86 from hammerlab/remove-soft-clipped-bases

By default, removing soft-clipped bases.

Run Details

9 of 9 new or added lines in 2 files covered. (100.0%)

1142 of 1280 relevant lines covered (89.22%)

1.78 hits per line