hammerlab / isovar

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LAST BUILD ON BRANCH v0.0.3

branch: v0.0.3

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• v0.0.3
• cli
• master
• v0.0.2
• less-noisy-logging
• trim-N-from-read-sequence
• the-worst-bug
• sbkio-0-4-2
• count-all-alleles-at-locus
• v0.1.0
• revert-37-add-gene-column-to-dataframes
• small-fixes-to-tests-and-args
• use-varcode-cli-for-loading-variants
• renamed-args-to-cli-for-consistency
• compute-mutated-offset-correctly
• fix-transcript-biotypes
• isovar-logger
• isovar-up-version
• use-assembly-and-trimming
• refactor-translation-module
• trim-variant-sequences-by-coverage-while-matching-to-reference
• add-min-alt-rna-reads-cli-arg
• fix-assembly-and-add-min-alt-rna-reads
• variant-sequence-combine-return-none
• v0.5.1
• death-to-namedtuples
• filter-mismatches-after-variant
• increment-version
• expose-flag-to-filter-mismatches-after-variant
• fix-variant-reading-into-intron
• remove-soft-clipped-bases
• v0.7.0

Build # 122

Build Type

push

travis-ci

Committed by iskandr

Commit Message

Merge pull request #18 from hammerlab/trim-N-from-read-sequence

Trim 'N' from nucleotide sequences when creating VariantRead

Run Details

659 of 750 relevant lines covered (87.87%)

1.75 hits per line