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hammerlab / isovar
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DEFAULT BRANCH: master
Repo Added 06 Apr 2016 07:13PM UTC
Files 30
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  • master
  • add-min-alt-rna-reads-cli-arg
  • cli
  • compute-mutated-offset-correctly
  • count-all-alleles-at-locus
  • death-to-namedtuples
  • expose-flag-to-filter-mismatches-after-variant
  • filter-mismatches-after-variant
  • fix-assembly-and-add-min-alt-rna-reads
  • fix-transcript-biotypes
  • fix-variant-reading-into-intron
  • increment-version
  • isovar-logger
  • isovar-up-version
  • less-noisy-logging
  • refactor-translation-module
  • remove-soft-clipped-bases
  • renamed-args-to-cli-for-consistency
  • revert-37-add-gene-column-to-dataframes
  • sbkio-0-4-2
  • small-fixes-to-tests-and-args
  • the-worst-bug
  • trim-N-from-read-sequence
  • trim-variant-sequences-by-coverage-while-matching-to-reference
  • use-assembly-and-trimming
  • use-varcode-cli-for-loading-variants
  • v0.0.2
  • v0.0.3
  • v0.1.0
  • v0.5.1
  • v0.7.0
  • variant-sequence-combine-return-none

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Merge pull request #86 from hammerlab/remove-soft-clipped-bases

By default, removing soft-clipped bases.

9 of 9 new or added lines in 2 files covered. (100.0%)

1142 of 1280 relevant lines covered (89.22%)

1.78 hits per line

Relevant lines Covered
Build:
Build:
1280 RELEVANT LINES 1142 COVERED LINES
1.78 HITS PER LINE
Source Files on master
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
477 master Merge pull request #86 from hammerlab/remove-soft-clipped-bases By default, removing soft-clipped bases. push 21 Jun 2017 11:40PM UTC web-flow travis-ci pending completion  
476 master Version bump Pull #86 21 Jun 2017 11:27PM UTC web-flow travis-ci pending completion  
474 master By default, removing soft-clipped bases. Pull #86 21 Jun 2017 08:21PM UTC web-flow travis-ci pending completion  
472 master Merge pull request #83 from hammerlab/fix-variant-reading-into-intron Fix variant reading into intron push 24 May 2017 09:02PM UTC web-flow travis-ci pending completion  
471 master using "is" for comparing to None, in test Pull #83 24 May 2017 03:37PM UTC web-flow travis-ci pending completion  
468 master Disabling invalid-unary-operand-type lint errors (similar to https://github.com/PyCQA/pylint/issues/1472) Pull #83 23 May 2017 10:27PM UTC web-flow travis-ci pending completion  
467 master Installing human and mouse genomes, release 87; removing old ones. Pull #83 23 May 2017 09:44PM UTC web-flow travis-ci pending completion  
455 master Merge pull request #76 from hammerlab/increment-version Incrementing the minor version, after the mismatches-after-variant change push 18 Jan 2017 05:31PM UTC web-flow travis-ci pending completion  
454 master Merge pull request #78 from hammerlab/expose-flag-to-filter-mismatches-after-variant Exposing --include-mismatches-after-variant as a translation flag. push 18 Jan 2017 05:27PM UTC web-flow travis-ci pending completion  
453 master Exposing --include-mismatches-after-variant as a translation flag. Pull #78 17 Jan 2017 10:24PM UTC web-flow travis-ci pending completion  
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