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hammerlab / isovar
88%
master: 89%

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Build:
LAST BUILD BRANCH: v0.7.0
DEFAULT BRANCH: master
Repo Added 06 Apr 2016 07:13PM UTC
Files 30
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LAST BUILD ON BRANCH add-min-alt-rna-reads-cli-arg
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  • add-min-alt-rna-reads-cli-arg
  • cli
  • compute-mutated-offset-correctly
  • count-all-alleles-at-locus
  • death-to-namedtuples
  • expose-flag-to-filter-mismatches-after-variant
  • filter-mismatches-after-variant
  • fix-assembly-and-add-min-alt-rna-reads
  • fix-transcript-biotypes
  • fix-variant-reading-into-intron
  • increment-version
  • isovar-logger
  • isovar-up-version
  • less-noisy-logging
  • master
  • refactor-translation-module
  • remove-soft-clipped-bases
  • renamed-args-to-cli-for-consistency
  • revert-37-add-gene-column-to-dataframes
  • sbkio-0-4-2
  • small-fixes-to-tests-and-args
  • the-worst-bug
  • trim-N-from-read-sequence
  • trim-variant-sequences-by-coverage-while-matching-to-reference
  • use-assembly-and-trimming
  • use-varcode-cli-for-loading-variants
  • v0.0.2
  • v0.0.3
  • v0.1.0
  • v0.5.1
  • v0.7.0
  • variant-sequence-combine-return-none

pending completion
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push

travis-ci

iskandr
added tests for 0 and 1 sequence inputs to assembly, can't use greedy_merge helper when order of results matters

1092 of 1237 relevant lines covered (88.28%)

1.76 hits per line

Relevant lines Covered
Build:
Build:
1237 RELEVANT LINES 1092 COVERED LINES
1.76 HITS PER LINE
Source Files on add-min-alt-rna-reads-cli-arg
  • List 0
  • Changed 1
  • Source Changed 1
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
413 add-min-alt-rna-reads-cli-arg added tests for 0 and 1 sequence inputs to assembly, can't use greedy_merge helper when order of results matters push 23 Nov 2016 05:17AM UTC iskandr travis-ci pending completion  
411 add-min-alt-rna-reads-cli-arg added a test with more unrelated sequences push 23 Nov 2016 04:28AM UTC iskandr travis-ci pending completion  
409 add-min-alt-rna-reads-cli-arg added timing test push 23 Nov 2016 04:10AM UTC iskandr travis-ci pending completion  
407 add-min-alt-rna-reads-cli-arg added one decoy to assembly test push 23 Nov 2016 03:57AM UTC iskandr travis-ci pending completion  
405 add-min-alt-rna-reads-cli-arg added assembly test push 23 Nov 2016 03:50AM UTC iskandr travis-ci pending completion  
403 add-min-alt-rna-reads-cli-arg cleaner logging by quickly returning from assembly functions when called with 0 or 1 sequences push 22 Nov 2016 10:14PM UTC iskandr travis-ci pending completion  
401 add-min-alt-rna-reads-cli-arg added type=int to min-alt-rna-reads arg push 22 Nov 2016 09:57PM UTC iskandr travis-ci pending completion  
399 add-min-alt-rna-reads-cli-arg take len of seq instead of seq.sequence push 22 Nov 2016 08:54PM UTC iskandr travis-ci pending completion  
395 add-min-alt-rna-reads-cli-arg added more variantsequence unit tests push 22 Nov 2016 08:36PM UTC iskandr travis-ci pending completion  
393 add-min-alt-rna-reads-cli-arg adding unit tests for VariantSequence methods, changed assembly algorithm to perform subsequence merging alongside overlap merging push 22 Nov 2016 07:48PM UTC iskandr travis-ci pending completion  
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