hammerlab
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isovar
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master: 89%
master: 89%
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LAST BUILD ON BRANCH
the-worst-bug
branch: the-worst-bug
CHANGE BRANCH
x
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the-worst-bug
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add-min-alt-rna-reads-cli-arg
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cli
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compute-mutated-offset-correctly
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count-all-alleles-at-locus
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death-to-namedtuples
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expose-flag-to-filter-mismatches-after-variant
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filter-mismatches-after-variant
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fix-assembly-and-add-min-alt-rna-reads
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fix-transcript-biotypes
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fix-variant-reading-into-intron
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increment-version
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isovar-logger
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isovar-up-version
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less-noisy-logging
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master
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refactor-translation-module
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remove-soft-clipped-bases
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renamed-args-to-cli-for-consistency
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revert-37-add-gene-column-to-dataframes
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sbkio-0-4-2
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small-fixes-to-tests-and-args
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trim-N-from-read-sequence
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trim-variant-sequences-by-coverage-while-matching-to-reference
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use-assembly-and-trimming
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use-varcode-cli-for-loading-variants
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v0.0.2
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v0.0.3
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v0.1.0
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v0.5.1
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v0.7.0
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variant-sequence-combine-return-none
CHANGE BRANCH
x
-
the-worst-bug
- add-min-alt-rna-reads-cli-arg
- cli
- compute-mutated-offset-correctly
- count-all-alleles-at-locus
- death-to-namedtuples
- expose-flag-to-filter-mismatches-after-variant
- filter-mismatches-after-variant
- fix-assembly-and-add-min-alt-rna-reads
- fix-transcript-biotypes
- fix-variant-reading-into-intron
- increment-version
- isovar-logger
- isovar-up-version
- less-noisy-logging
- master
- refactor-translation-module
- remove-soft-clipped-bases
- renamed-args-to-cli-for-consistency
- revert-37-add-gene-column-to-dataframes
- sbkio-0-4-2
- small-fixes-to-tests-and-args
- trim-N-from-read-sequence
- trim-variant-sequences-by-coverage-while-matching-to-reference
- use-assembly-and-trimming
- use-varcode-cli-for-loading-variants
- v0.0.2
- v0.0.3
- v0.1.0
- v0.5.1
- v0.7.0
- variant-sequence-combine-return-none
push
travis-ci
691 of 790 relevant lines covered (87.47%)
1.75 hits per line
Relevant lines Covered
790
RELEVANT LINES
691
COVERED LINES
1.75
HITS PER LINE
Source Files on the-worst-bug
| Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
|---|
Recent builds
| Builds | Branch | Commit | Type | Ran | Committer | Via | Coverage |
|---|---|---|---|---|---|---|---|
| 147 | the-worst-bug | created helper for getting pileup reads at specified position | push |  iskandr |
travis-ci | pending completion | |
| 145 | the-worst-bug | don't rely on query_position being an int, could be None | push | iskandr |
travis-ci | pending completion | |
| 143 | the-worst-bug | added unit tests for somatic variants with known numbers of variant reads in tumor and RNA samples | push | iskandr |
travis-ci | pending completion | |
| 141 | the-worst-bug | still mucking with samtools | push | iskandr |
travis-ci | pending completion | |
| 139 | the-worst-bug | fix pysam install on Travis (version 0.9.0) | push | iskandr |
travis-ci | pending completion | |
| 137 | the-worst-bug | got rid of decode('ascii') in unit tests | push | iskandr |
travis-ci | pending completion | |
| 135 | the-worst-bug | misunderstood pos to be 1-based in pysam, apparently incorrect | push | iskandr |
travis-ci | pending completion | |
| 126 | the-worst-bug | reorganized adding args to parser to simplify reuse from vaxrank | push | iskandr |
travis-ci | pending completion |