hammerlab
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isovar
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master: 89%
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LAST BUILD ON BRANCH
cli
branch: cli
CHANGE BRANCH
x
-
cli
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master
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v0.0.2
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less-noisy-logging
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trim-N-from-read-sequence
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v0.0.3
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the-worst-bug
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sbkio-0-4-2
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count-all-alleles-at-locus
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v0.1.0
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revert-37-add-gene-column-to-dataframes
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small-fixes-to-tests-and-args
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use-varcode-cli-for-loading-variants
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renamed-args-to-cli-for-consistency
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compute-mutated-offset-correctly
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fix-transcript-biotypes
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isovar-logger
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isovar-up-version
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use-assembly-and-trimming
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refactor-translation-module
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trim-variant-sequences-by-coverage-while-matching-to-reference
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add-min-alt-rna-reads-cli-arg
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fix-assembly-and-add-min-alt-rna-reads
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variant-sequence-combine-return-none
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v0.5.1
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death-to-namedtuples
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filter-mismatches-after-variant
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increment-version
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expose-flag-to-filter-mismatches-after-variant
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fix-variant-reading-into-intron
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remove-soft-clipped-bases
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v0.7.0
CHANGE BRANCH
x
-
cli
- master
- v0.0.2
- less-noisy-logging
- trim-N-from-read-sequence
- v0.0.3
- the-worst-bug
- sbkio-0-4-2
- count-all-alleles-at-locus
- v0.1.0
- revert-37-add-gene-column-to-dataframes
- small-fixes-to-tests-and-args
- use-varcode-cli-for-loading-variants
- renamed-args-to-cli-for-consistency
- compute-mutated-offset-correctly
- fix-transcript-biotypes
- isovar-logger
- isovar-up-version
- use-assembly-and-trimming
- refactor-translation-module
- trim-variant-sequences-by-coverage-while-matching-to-reference
- add-min-alt-rna-reads-cli-arg
- fix-assembly-and-add-min-alt-rna-reads
- variant-sequence-combine-return-none
- v0.5.1
- death-to-namedtuples
- filter-mismatches-after-variant
- increment-version
- expose-flag-to-filter-mismatches-after-variant
- fix-variant-reading-into-intron
- remove-soft-clipped-bases
- v0.7.0
push
travis-ci
628 of 724 relevant lines covered (86.74%)
1.73 hits per line
Relevant lines Covered
724
RELEVANT LINES
628
COVERED LINES
1.73
HITS PER LINE
Source Files on cli
| Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
|---|
Recent builds
| Builds | Branch | Commit | Type | Ran | Committer | Via | Coverage |
|---|---|---|---|---|---|---|---|
| 94 | cli | fixed unit test for dropping MAPQ=255 reads, added unit test for multiple protein lengths | push |  iskandr |
travis-ci | pending completion | |
| 90 | cli | instal pyensembl for mouse data | push | iskandr |
travis-ci | pending completion | |
| 84 | cli | added test for sorting protein sequences | push | iskandr |
travis-ci | pending completion | |
| 82 | cli | updated script names in setup.py | push | iskandr |
travis-ci | pending completion | |
| 72 | cli | fixed offset computation for trimmed reference context | push | iskandr |
travis-ci | pending completion | |
| 70 | cli | fixed extra arg in translate | push | iskandr |
travis-ci | pending completion | |
| 65 | cli | added travis badge | push | iskandr |
travis-ci | pending completion |