hammerlab / isovar

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LAST BUILD ON BRANCH refactor-translation-module

branch: refactor-translation-module

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• refactor-translation-module
• add-min-alt-rna-reads-cli-arg
• cli
• compute-mutated-offset-correctly
• count-all-alleles-at-locus
• death-to-namedtuples
• expose-flag-to-filter-mismatches-after-variant
• filter-mismatches-after-variant
• fix-assembly-and-add-min-alt-rna-reads
• fix-transcript-biotypes
• fix-variant-reading-into-intron
• increment-version
• isovar-logger
• isovar-up-version
• less-noisy-logging
• master
• remove-soft-clipped-bases
• renamed-args-to-cli-for-consistency
• revert-37-add-gene-column-to-dataframes
• sbkio-0-4-2
• small-fixes-to-tests-and-args
• the-worst-bug
• trim-N-from-read-sequence
• trim-variant-sequences-by-coverage-while-matching-to-reference
• use-assembly-and-trimming
• use-varcode-cli-for-loading-variants
• v0.0.2
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• v0.7.0
• variant-sequence-combine-return-none

Build # 330

Build Type

push

travis-ci

Committed by iskandr

Commit Message

got rid of special case for 1 or 2 nucleotides in translation

Run Details

980 of 1131 relevant lines covered (86.65%)

1.73 hits per line