broadinstitute / viral-core / 19716627924

Builds Branch Commit Type Ran Committer Via Coverage
19716627924 dp-demux Merge 1eb52faaf into 686fbe70e Pull #134 web-flow github
69.18
19716620336 dp-demux Fix i5 reverse complement for 3-barcode demux Fixes #133 The splitcode_demux_fastqs function was failing to demultiplex 3-barcode samples when the i5 barcode (barcode_2) in DRAGEN FASTQ headers was reverse-complemented relative to the sampleshee... push dpark01 github
68.98
19704462296 v2.5.5 Merge pull request #132 from broadinstitute/dp-demux Handle N bases in FASTQ barcodes and gracefully handle unmatched barcodes push web-flow github
69.14
19703732656 master Merge pull request #132 from broadinstitute/dp-demux Handle N bases in FASTQ barcodes and gracefully handle unmatched barcodes push web-flow github
69.14
19703339438 dp-demux Return empty output instead of error when barcodes don't match samplesheet When FASTQ barcodes don't match any samplesheet entries (due to contaminant reads, barcode hopping, or unrecognized indices), the demux now produces empty BAM files with z... Pull #132 dpark01 github
69.09
19702730764 dp-demux Handle N bases in FASTQ barcodes as wildcards for demux matching When the sequencer has low confidence in an index base, it reports N (no-call). Previously exact string matching would fail to match these barcodes. Now N bases in FASTQ headers are... push dpark01 github
69.63
19702426703 dp-demux Merge pull request #131 from broadinstitute/dp-demux Fix i5 barcode orientation auto-detection, empty FASTQ handling, and sequencing center default push web-flow github
69.48
19690775809 v2.5.4 Merge pull request #131 from broadinstitute/dp-demux Fix i5 barcode orientation auto-detection, empty FASTQ handling, and sequencing center default push web-flow github
69.48
19690575055 master Merge pull request #131 from broadinstitute/dp-demux Fix i5 barcode orientation auto-detection, empty FASTQ handling, and sequencing center default push web-flow github
69.48
19690364722 dp-demux Add TDD guidance to CLAUDE.md for test-first development Instructs Claude Code to follow test-driven development approach: - Write tests before implementing features - Sequence planning with tests first, implementation second - Run tests in docke... Pull #131 dpark01 github
69.5
19690296382 dp-demux Fix i5 barcode orientation auto-detection, empty FASTQ handling, and sequencing center default This commit addresses three issues in splitcode_demux_fastqs and illumina_metadata: 1. i5 Barcode Orientation Auto-Detection (fixes #130) - Added m... push dpark01 github
69.25
19690303298 dp-demux Merge e0658e89b into 89856edd3 Pull #131 web-flow github
69.43
19652892173 v2.5.3 Merge pull request #129 from broadinstitute/dp-demux Fix illumina_metadata to support 3-barcode and mixed samplesheets push web-flow github
69.62
19651584716 master Merge pull request #129 from broadinstitute/dp-demux Fix illumina_metadata to support 3-barcode and mixed samplesheets push web-flow github
69.42
19651071710 dp-demux Fix illumina_metadata to support 3-barcode and mixed samplesheets The illumina_metadata function was failing on 3-barcode samplesheets where multiple samples share outer barcodes (barcode_1 + barcode_2) and differ only in inner barcodes (barcode_... Pull #129 dpark01 github
69.62