broadinstitute / viral-core / 13941403591

Builds Branch Commit Type Ran Committer Via Coverage
13941403591 ct-swiftseq-demux-integration splitcode_demux: emit json files with runinfo, meta_by_filename, meta_by_sample push tomkinsc github
60.58
13940810910 ct-swiftseq-demux-integration add convert_splitcode_demux_metrics_to_picard_style to emit picard-style metrics file; re-enable splitcode code path add convert_splitcode_demux_metrics_to_picard_style to emit picard-style metrics file; re-enable splitcode code path I had bypass... push tomkinsc github
60.36
13936478885 ct-swiftseq-demux-integration add sample sheet rev-comp functionality the SampleSheet class now has a function, `rev_comp_barcode_values(barcode_columns_to_revcomp=None, inplace=True)`, which manipulates stored rows of the supplied sample sheet to reverse-complement sequences... push tomkinsc github
61.48
13159225737 ll-add_swiftseq_demux Small change in argument description push lauraluebbert github
63.26
13149819572 ll-add_swiftseq_demux Add splitcode demux parsers push lauraluebbert github
62.89
13144626616 v2.4.2 viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 (#117) * viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 * s/conda create/mamba create/ push web-flow github
66.04
13077418638 master viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 (#117) * viral-core container Dockerfile: bump viral-baseimage 0.2.3 -> 0.2.4 * s/conda create/mamba create/ push web-flow github
66.04
13066551498 ct-bump-viral-baseimage-0.2.4 s/conda create/mamba create/ Pull #117 tomkinsc github
65.71
13066551657 ct-bump-viral-baseimage-0.2.4 Merge 26b6aa612 into 320a5a7da Pull #117 web-flow github
66.04
12774618164 ll-add_swiftseq_demux Add splitcode to requirements (#115) push web-flow github
65.71
12300320966 master Add splitcode to requirements (#115) push web-flow github
66.04
11839767506 v2.4.1 update calc_mem.py script used to obtain within-container memory limit for cgroup v2 (#114) * update calc_mem.py script used to obtain within-container memory limit for cgroup v2 update calc_mem.py script used to obtain within-container memory... push web-flow github
66.04
11839767478 v2.4.1 update calc_mem.py script used to obtain within-container memory limit for cgroup v2 (#114) * update calc_mem.py script used to obtain within-container memory limit for cgroup v2 update calc_mem.py script used to obtain within-container memory... push web-flow github
66.04
11734937038 master update calc_mem.py script used to obtain within-container memory limit for cgroup v2 (#114) * update calc_mem.py script used to obtain within-container memory limit for cgroup v2 update calc_mem.py script used to obtain within-container memory... push web-flow github
66.04
11734346156 ct-update-docker-mem-calc explicit monkeypatching of os.path to test cgroup v2 on cgroup v1 environment Pull #114 tomkinsc github
66.04