broadinstitute / viral-core / 10045963795

Builds Branch Commit Type Ran Committer Via Coverage
10045963795 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9944286477 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9844593225 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9748922978 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9650151278 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9552466477 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9453260615 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9452484839 master index bam before calling samtools idxstats; warn user if input lacks reads (#102) * index bam before calling samtools idxstats; warn user if input lacks reads in `read_utils.py::minimap2_idxstats()`, warn the user if the input bam file lacks r... push web-flow github
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9421853202 master In cmd.py argparse common_args(), set default number of threads to all available if --threads is unspecified (#104) * In cmd.py argparse common_args(), set default number of threads to all available if --threads is unspecified In cmd.py argpar... push web-flow github
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9421866805 ct-bugfix-minimap2_idxstats Merge branch 'master' into ct-bugfix-minimap2_idxstats Pull #102 web-flow github
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9421866945 ct-bugfix-minimap2_idxstats Merge 8bda2f45f into 853bea191 Pull #102 web-flow github
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9419138130 ct-set-default-threads Merge branch 'master' into ct-set-default-threads Pull #104 tomkinsc github
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9419127084 master add fgbio to conda dependencies (#103) * add fgbio to conda dependencies add fgbio to conda dependencies, in anticipation of working with UMIs see: https://fulcrumgenomics.github.io/fgbio/ * add pandas dependency explicitly * be more ex... push web-flow github
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9418913971 ct-add-fgbio explicitly set .coveragerc dotfile Pull #103 tomkinsc github
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8840648206 ct-bugfix-minimap2_idxstats Merge 956ffeb4e into efb8146f3 Pull #102 web-flow travis-pro
64.07