broadinstitute / viral-core / 19645209761

Builds Branch Commit Type Ran Committer Via Coverage
19645209761 v2.5.2 Merge pull request #128 from broadinstitute/dp-parser-fixes Fix CLI argument parsing bugs and add metadata override parameters push web-flow github
69.62
19645209758 v2.5.2 Merge pull request #128 from broadinstitute/dp-parser-fixes Fix CLI argument parsing bugs and add metadata override parameters push web-flow github
69.55
19644276383 master Merge pull request #128 from broadinstitute/dp-parser-fixes Fix CLI argument parsing bugs and add metadata override parameters push web-flow github
69.42
19643786736 dp-parser-fixes Fix CLI argument parsing bugs and add metadata override parameters This commit addresses all issues reported in #127: ## Fixed CLI Argument Parsing Bugs Fixed TypeError in three CLI commands that used split_args=True with incompatible main func... Pull #128 dpark01 github
69.62
19643822512 dp-parser-fixes Merge 66efaf252 into a1fa8b83d Pull #128 web-flow github
69.55
19301268197 v2.5.1 Merge pull request #126 from broadinstitute/dp-conda-fix Fix conda dependency installation regression in v2.5.0 push web-flow github
68.95
19300981706 master Merge pull request #126 from broadinstitute/dp-conda-fix Fix conda dependency installation regression in v2.5.0 push web-flow github
68.97
19300487268 dp-conda-fix Remove -x flag from install script set command The -x flag prints every command before execution, which creates excessive output during builds. Keep -e and -o pipefail for error handling. 🤖 Generated with [Claude Code](https://claude.com/claude-... Pull #126 dpark01 github
68.76
19300489072 dp-conda-fix Merge 00e4927fa into a319d20e3 Pull #126 web-flow github
68.97
19300364993 dp-conda-fix Merge 81933ca85 into a319d20e3 Pull #126 web-flow github
68.95
19300357117 dp-conda-fix Fix conda dependency installation regression in v2.5.0 Restores incremental package installation behavior that was changed in v2.5.0, which broke downstream projects that depend on viral-core. Changes: - Dockerfile: Add `mamba create` step to cr... push dpark01 github
68.78
19284186615 v2.5.0 Merge pull request #123 from broadinstitute/ct-swiftseq-demux-integration Implement splitcode_demux_fastqs for DRAGEN FASTQ demultiplexing (issue #122) push web-flow github
68.9
19284038465 master Merge pull request #123 from broadinstitute/ct-swiftseq-demux-integration Implement splitcode_demux_fastqs for DRAGEN FASTQ demultiplexing (issue #122) push web-flow github
68.97
19238679849 ct-swiftseq-demux-integration Fix NameError: use tools.splitcode.run_splitcode_on_pool The function run_splitcode_on_pool was refactored to tools/splitcode.py but the call site in splitcode_demux() was not updated to use the qualified name. This caused a NameError at runtime.... Pull #123 dpark01 github
68.78
19234277912 ct-swiftseq-demux-integration Address code review observations (minor improvements) Addressing minor observations 1 and 3 from independent code review: 1. Move gzip import to module level (line 14) - Was previously imported inline at line 547 - Now follows standard Pyt... Pull #123 dpark01 github
69.32