broadinstitute / viral-core / 15840813054

Builds Branch Commit Type Ran Committer Via Coverage
15840813054 ct-swiftseq-demux-integration change sqlite3 text_factory to str from sqlite3.OptimizedUnicode, which was removed in Python 3.12 (and was previously an alias to str) push tomkinsc github
58.64
15483328574 ct-swiftseq-demux-integration additional handling and logging related to async processes used for barcode counting push tomkinsc github
59.04
15482427238 ct-swiftseq-demux-integration log line re-phrasing push tomkinsc github
58.78
15482383355 ct-swiftseq-demux-integration additional barcode count debug logging push tomkinsc github
59.2
15482247950 ct-swiftseq-demux-integration more verbose logging related to barcode counting (report num of tile barcode files found in barcodes_dir) push tomkinsc github
58.83
15481925247 ct-swiftseq-demux-integration minor comment change to re-trigger CI build push tomkinsc github
59.23
14732813453 ct-swiftseq-demux-integration restore type hint push tomkinsc github
59.15
14368044570 ct-swiftseq-demux-integration set --strict-channel-priority in CONDA_CHANNEL_STRING push tomkinsc github
59.75
14367824183 ct-swiftseq-demux-integration set CONDA_CHANNEL_STRING as env var in Dockerfile; switch to mamba in Dockerfile for creating environment push tomkinsc github
59.75
14367254315 ct-swiftseq-demux-integration viral-baseimage 0.2.3 -> 0.2.5 push tomkinsc github
59.34
14341135925 master Merge pull request #118 from broadinstitute/ct-ghactions-update-ubuntu GitHub Actions runner ubuntu upgrade 20.04 -> 24.04 push web-flow github
66.02
14203652746 ct-ghactions-update-ubuntu GitHub Actions runner ubuntu upgrade 20.04 -> 24.04 Pull #118 tomkinsc github
65.78
14173117421 ct-swiftseq-demux-integration restore collapse_duplicated_barcodes arg push tomkinsc github
59.34
14149632561 ct-swiftseq-demux-integration typo fix push tomkinsc github
59.33
13964013621 ct-swiftseq-demux-integration add multiprocessing for splitcode demux, scattered one pool per worker; and for picard fq -> ubam, one fq pair per worker push tomkinsc github
59.75