broadinstitute / viral-core / 19725492984

Builds Branch Commit Type Ran Committer Via Coverage
19725492984 master Merge pull request #137 from broadinstitute/dp-demux Emit zero BAMs when FASTQ barcodes don't match samplesheet push web-flow github
69.17
19725307611 dp-demux Merge branch 'master' into dp-demux Pull #137 web-flow github
69.19
19725307751 dp-demux Merge e659007b3 into 9d5de9f96 Pull #137 web-flow github
69.35
19725297126 dp-demux Emit zero BAMs when FASTQ barcodes don't match samplesheet When splitcode_demux_fastqs receives FASTQs with barcodes that don't match any samplesheet entry (or empty FASTQs), it now emits zero BAM files instead of creating an empty BAM. This alig... push dpark01 github
69.37
19725302967 dp-demux Merge bf82e7378 into 9d5de9f96 Pull #137 web-flow github
69.35
19724131367 master Merge pull request #136 from broadinstitute/dp-demux Parallelize Picard FastqToSam in splitcode_demux_fastqs push web-flow github
68.76
19723885077 dp-demux Parallelize Picard FastqToSam conversions in splitcode_demux_fastqs Performance optimization for 3-barcode demultiplexing workflow. Changes: - Add run_picard_fastq_to_sam_for_splitcode_demux() helper function for ProcessPoolExecutor compatibil... Pull #136 dpark01 github
68.87
19722905703 v2.5.7 Merge pull request #135 from broadinstitute/dp-demux Handle N bases in barcode_2 for 3-barcode demux filtering push web-flow github
69.14
19722905574 v2.5.7 Merge pull request #135 from broadinstitute/dp-demux Handle N bases in barcode_2 for 3-barcode demux filtering push web-flow github
69.08
19722620521 master Merge pull request #135 from broadinstitute/dp-demux Handle N bases in barcode_2 for 3-barcode demux filtering push web-flow github
69.14
19722026750 dp-demux Handle N bases in barcode_2 for 3-barcode demux filtering When FASTQ barcode headers contain N bases (sequencer no-calls), the second filtering step in splitcode_demux_fastqs was using exact string matching (==) which would fail to match the samp... Pull #135 dpark01 github
69.16
19722032944 dp-demux Merge c1927eb27 into 63978a735 Pull #135 web-flow github
68.97
19718063972 v2.5.6 Merge pull request #134 from broadinstitute/dp-demux Fix i5 reverse complement for 3-barcode demux push web-flow github
69.0
19716938109 master Merge pull request #134 from broadinstitute/dp-demux Fix i5 reverse complement for 3-barcode demux push web-flow github
69.18
19716644703 dp-demux Merge branch 'master' into dp-demux Pull #134 web-flow github
69.18