broadinstitute / viral-core / 15482427238

Builds Branch Commit Type Ran Committer Via Coverage
15482427238 ct-swiftseq-demux-integration log line re-phrasing push tomkinsc github
58.78
15482383355 ct-swiftseq-demux-integration additional barcode count debug logging push tomkinsc github
59.2
15482247950 ct-swiftseq-demux-integration more verbose logging related to barcode counting (report num of tile barcode files found in barcodes_dir) push tomkinsc github
58.83
15481925247 ct-swiftseq-demux-integration minor comment change to re-trigger CI build push tomkinsc github
59.23
14732813453 ct-swiftseq-demux-integration restore type hint push tomkinsc github
59.15
14368044570 ct-swiftseq-demux-integration set --strict-channel-priority in CONDA_CHANNEL_STRING push tomkinsc github
59.75
14367824183 ct-swiftseq-demux-integration set CONDA_CHANNEL_STRING as env var in Dockerfile; switch to mamba in Dockerfile for creating environment push tomkinsc github
59.75
14367254315 ct-swiftseq-demux-integration viral-baseimage 0.2.3 -> 0.2.5 push tomkinsc github
59.34
14341135925 master Merge pull request #118 from broadinstitute/ct-ghactions-update-ubuntu GitHub Actions runner ubuntu upgrade 20.04 -> 24.04 push web-flow github
66.02
14203652746 ct-ghactions-update-ubuntu GitHub Actions runner ubuntu upgrade 20.04 -> 24.04 Pull #118 tomkinsc github
65.78
14173117421 ct-swiftseq-demux-integration restore collapse_duplicated_barcodes arg push tomkinsc github
59.34
14149632561 ct-swiftseq-demux-integration typo fix push tomkinsc github
59.33
13964013621 ct-swiftseq-demux-integration add multiprocessing for splitcode demux, scattered one pool per worker; and for picard fq -> ubam, one fq pair per worker push tomkinsc github
59.75
13941403591 ct-swiftseq-demux-integration splitcode_demux: emit json files with runinfo, meta_by_filename, meta_by_sample push tomkinsc github
60.58
13940810910 ct-swiftseq-demux-integration add convert_splitcode_demux_metrics_to_picard_style to emit picard-style metrics file; re-enable splitcode code path add convert_splitcode_demux_metrics_to_picard_style to emit picard-style metrics file; re-enable splitcode code path I had bypass... push tomkinsc github
60.36