griffithlab / pVACtools

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LAST BUILD ON BRANCH codex/harden-filtering-cli-errors

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• codex/harden-filtering-cli-errors
• 1.5.14
• 6.0.0_release
• 6.0.0a11_bugfixes
• 7.0.0
• 7.0.0_admin
• 7.0.0_bugfixes
• 7.0.0_docs
• 7.0.0_example_data
• 7.0.0_failing_test
• 7.0.0_logging
• 7.0.0_ml_predictor
• 7.0.0_normalized_percentiles_length_agnostic
• 7.0.0_pvacview
• 7.0.0_pvacview_dedup_code
• 8.0.0_bugfix
• MHC_Class_File_Renaming
• Prioritize_IC50_Or_Percentile
• TL-MHC
• add-immunoscope
• add_pvacview_citation
• additional-filtering
• agfusion
• aggregate_allele_counts
• aggregate_inclusion_count_limit_bugfix
• aggregate_na
• aggregate_percentile
• aggregate_report
• aggregate_report_filter
• all_chunks
• allele
• anchor_docs
• anchor_types
• blast
• blast_hotfix
• calculate-rank-scores
• cmd_description
• codemeta
• codex/cleanup-packaging-metadata
• codex/fix-agfusion-read-support
• codex/parse-transcript-booleans
• codex/preserve-cli-attribute-errors
• codex/remove-filter-eval
• compare_input_fix
• conda
• consolidate_mhcflurryel
• contribute
• coveralls
• coveralls2
• csq_proximal
• dependabot/pip/docs/setuptools-78.1.1
• dependabot/pip/docs/setuptools-83.0.0
• docs
• docs_sorting
• downstream_sequence_length
• el_only
• epitope_length
• epitope_length2
• example_data
• example_data_6.0.0a10
• export_header_row
• figure
• filter_docs
• fix-1366
• fix-pvacsplice-help
• fix/remove-pdb-debugger
• fix_pvacvector_tmp_file_removal
• flurry_state
• frameshift
• gene_of_interest
• generate_protein_fasta
• github_ci
• gt_docs
• gt_error
• help_text
• hotfix
• hotfix_pvacbind
• hotfix_vaxrank
• ic50-sorting
• iedb
• import_cleanup
• included_df_sort
• incomplete-cds-filter
• index
• inframe_del
• insertion_fasta
• issue-1138
• issue-1298
• issue-457
• issue_1225
• issue_1236
• issue_1274
• issue_1275
• issue_1276_2
• issue_1284
• issue_1311
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• issues/1142
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• license
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• net_chop
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• netchop_stab
• netmhciipan_version
• new_top_score_metric2
• no_aa_change
• normal_sample
• normalized_percentiles
• order_form
• ordering_bugfix
• ordering_form
• output_parser_tests
• pVACcompare_integration
• pVACvector-biotype-fix
• peptide_length
• percentile
• percentile_cutoffs
• percentile_filter
• percentile_none
• permissions
• pkg_resource
• prediction
• predictor
• proximal_generate_fasta
• pvacbind_refactor
• pvacfuse
• pvacfuse_hotfix
• pvacfuse_sorting
• pvacfuse_speedup
• pvacplice_anchor_input
• pvacsplice_addNonHumanUnittest
• pvacsplice_aggregate_report
• pvacsplice_bugfix
• pvacsplice_frameshift
• pvacsplice_generate_protein_fasta
• pvacsplice_include_nonhumanEnsemblTranscript
• pvacsplice_inputs
• pvacsplice_junction
• pvacsplice_troubleshoot_issue1223
• pvacsplice_troubleshoot_proteinfasta
• pvacsplice_unsupported_aas
• pvacvector
• pvacvector_args
• pvacvector_bug
• pvacvector_bugfix
• pvacvector_clipping
• pvacvector_hotfix
• pvacvector_params
• pvacvector_percentile
• pvacvector_tests
• pvacview_bugfix
• pvacview_bugfixes
• pvacview_help
• pvacview_incl_best_peptide
• pvacview_index
• pvacview_port
• pvafuse_error
• py38
• python_version
• raise
• read_support
• ref_match
• ref_prot
• ref_prot_missing_sequence
• ref_proteome
• remove_combined
• remove_condensed
• remove_integrate_neo
• revert-659-remove_integrate_neo
• rtd
• selected_junctions
• speedup
• staging
• summary_percentiles
• tensorflow
• test_bug
• test_coverage
• test_optimization
• test_speedup
• test_speedup_staging
• tier_docs
• tier_list
• tlimm_percentile
• tmp_files
• top_score_filter
• top_score_metric2
• top_score_metric2_2
• travis_hotfix
• tsm2_bugfix
• unsupported_aas
• update_tiers
• update_tiers_bugfix
• v1.5.10
• v1.5.11
• v1.5.12
• v1.5.13
• v1.5.14
• v1.5.6
• v1.5.7
• v1.5.8
• v1.5.9
• v2.0.0
• v2.0.1
• v2.0.2
• valid_alleles_length
• valid_alleles_species
• vaxrank
• vector-biotype-fix
• vep

Build # 30012527783

Build Type

Pull #1430

github

Committed by web-flow

Commit Message

Merge da54e46d5 into dfa409cac

Pull Request Pull Request #1430: Harden filtering and runtime error handling

Coverage Stats

56 of 58 new or added lines in 10 files covered. (96.55%)

5 existing lines in 5 files now uncovered.

9614 of 11686 relevant lines covered (82.27%)

2.47 hits per line