griffithlab / pVACtools

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• prediction
• 1.5.14
• 6.0.0_release
• 6.0.0a11_bugfixes
• 7.0.0
• 7.0.0_admin
• 7.0.0_bugfixes
• 7.0.0_docs
• 7.0.0_example_data
• 7.0.0_failing_test
• 7.0.0_logging
• 7.0.0_ml_predictor
• 7.0.0_normalized_percentiles_length_agnostic
• 7.0.0_pvacview
• 7.0.0_pvacview_dedup_code
• 8.0.0_bugfix
• MHC_Class_File_Renaming
• Prioritize_IC50_Or_Percentile
• TL-MHC
• add-immunoscope
• add_pvacview_citation
• additional-filtering
• agfusion
• aggregate_allele_counts
• aggregate_inclusion_count_limit_bugfix
• aggregate_na
• aggregate_percentile
• aggregate_report
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• allele
• anchor_docs
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• blast
• blast_hotfix
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• contribute
• coveralls
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• dependabot/pip/docs/setuptools-78.1.1
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• downstream_sequence_length
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• epitope_length
• epitope_length2
• example_data
• example_data_6.0.0a10
• export_header_row
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• fix-1366
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• fix/remove-pdb-debugger
• fix_pvacvector_tmp_file_removal
• flurry_state
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• generate_protein_fasta
• github_ci
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• issue-1138
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• peptide_length
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• percentile_filter
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• proximal_generate_fasta
• pvacbind_refactor
• pvacfuse
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• pvacfuse_speedup
• pvacplice_anchor_input
• pvacsplice_addNonHumanUnittest
• pvacsplice_aggregate_report
• pvacsplice_bugfix
• pvacsplice_frameshift
• pvacsplice_generate_protein_fasta
• pvacsplice_include_nonhumanEnsemblTranscript
• pvacsplice_inputs
• pvacsplice_junction
• pvacsplice_troubleshoot_issue1223
• pvacsplice_troubleshoot_proteinfasta
• pvacsplice_unsupported_aas
• pvacvector
• pvacvector_args
• pvacvector_bug
• pvacvector_bugfix
• pvacvector_clipping
• pvacvector_hotfix
• pvacvector_params
• pvacvector_percentile
• pvacvector_tests
• pvacview_bugfix
• pvacview_help
• pvacview_incl_best_peptide
• pvacview_index
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• pvafuse_error
• py38
• python_version
• raise
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• ref_match
• ref_prot
• ref_prot_missing_sequence
• ref_proteome
• remove_combined
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• remove_integrate_neo
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• rtd
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• speedup
• staging
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• tensorflow
• test_bug
• test_coverage
• test_optimization
• test_speedup
• test_speedup_staging
• tier_docs
• tier_list
• tlimm_percentile
• top_score_filter
• top_score_metric2
• top_score_metric2_2
• travis_hotfix
• tsm2_bugfix
• unsupported_aas
• update_tiers
• update_tiers_bugfix
• v1.5.10
• v1.5.11
• v1.5.12
• v1.5.13
• v1.5.14
• v1.5.6
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• v1.5.9
• v2.0.0
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• v2.0.2
• valid_alleles_length
• valid_alleles_species
• vaxrank
• vector-biotype-fix
• vep

Build # 29772855967

Build Type

Pull #1420

github

Committed by web-flow

Commit Message

Merge f353699e3 into 6c1a291ab

Pull Request Pull Request #1420: Refactor prediction pipeline

Coverage Stats

8933 of 11041 relevant lines covered (80.91%)

2.43 hits per line