griffithlab / pVACtools

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master: 86%

LAST BUILD ON BRANCH speedup

branch: speedup

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• speedup
• 1.5.14
• MHC_Class_File_Renaming
• Prioritize_IC50_Or_Percentile
• add_pvacview_citation
• additional-filtering
• agfusion
• aggregate_allele_counts
• aggregate_inclusion_count_limit_bugfix
• aggregate_na
• aggregate_percentile
• aggregate_report
• anchor_types
• blast
• blast_hotfix
• cmd_description
• compare_input_fix
• conda
• contribute
• coveralls
• coveralls2
• csq_proximal
• dependabot/pip/docs/setuptools-78.1.1
• docs
• epitope_length
• epitope_length2
• export_header_row
• figure
• filter_docs
• fix-pvacsplice-help
• fix_pvacvector_tmp_file_removal
• frameshift
• gene_of_interest
• github_ci
• gt_docs
• gt_error
• hotfix
• hotfix_pvacbind
• hotfix_vaxrank
• ic50-sorting
• iedb
• incomplete-cds-filter
• index
• inframe_del
• insertion_fasta
• issue-1138
• issue-1298
• issue-457
• issue_1225
• issue_1236
• issue_1274
• issue_1275
• issue_1276_2
• issue_1284
• issue_1311
• issues/1142
• issues/1176
• issues/1187
• license
• malachi-docs-fix-depname
• master
• matching
• merge-scripts
• mhcflurry
• mhcflurry_calls
• mixmhcpred
• mouse
• mutation_position
• na
• netchop_stab
• netmhciipan_version
• no_aa_change
• normal_sample
• ordering_bugfix
• pVACcompare_integration
• pVACvector-biotype-fix
• peptide_length
• percentile
• percentile_filter
• percentile_none
• permissions
• proximal_generate_fasta
• pvacfuse
• pvacfuse_hotfix
• pvacfuse_sorting
• pvacfuse_speedup
• pvacplice_anchor_input
• pvacsplice_addNonHumanUnittest
• pvacsplice_aggregate_report
• pvacsplice_bugfix
• pvacsplice_frameshift
• pvacsplice_generate_protein_fasta
• pvacsplice_include_nonhumanEnsemblTranscript
• pvacsplice_troubleshoot_issue1223
• pvacsplice_troubleshoot_proteinfasta
• pvacsplice_unsupported_aas
• pvacvector
• pvacvector_args
• pvacvector_bug
• pvacvector_bugfix
• pvacvector_clipping
• pvacvector_hotfix
• pvacvector_params
• pvacview_bugfix
• pvacview_help
• pvacview_incl_best_peptide
• pvacview_index
• pvafuse_error
• py38
• python_version
• raise
• read_support
• ref_match
• ref_prot
• ref_prot_missing_sequence
• remove_condensed
• remove_integrate_neo
• revert-659-remove_integrate_neo
• rtd
• selected_junctions
• staging
• tensorflow
• test_bug
• test_coverage
• test_optimization
• tier_docs
• top_score_metric2
• travis_hotfix
• unsupported_aas
• v1.5.10
• v1.5.11
• v1.5.12
• v1.5.13
• v1.5.14
• v1.5.6
• v1.5.7
• v1.5.8
• v1.5.9
• v2.0.0
• v2.0.1
• v2.0.2
• valid_alleles_species
• vaxrank
• vector-biotype-fix
• vep

Build # 15420518949

Build Type

Pull #1247

github

Committed by web-flow

Commit Message

Merge 99b0adfe2 into 85358f799

Pull Request Pull Request #1247: Subset reference protome test file to speed up processing

Run Details

7871 of 9139 relevant lines covered (86.13%)

4.29 hits per line