griffithlab
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pVACtools
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test_speedup
branch: test_speedup
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test_speedup
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1.5.14
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6.0.0_release
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6.0.0a11_bugfixes
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7.0.0
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7.0.0_admin
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7.0.0_bugfixes
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7.0.0_docs
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7.0.0_example_data
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7.0.0_failing_test
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7.0.0_logging
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7.0.0_ml_predictor
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7.0.0_normalized_percentiles_length_agnostic
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7.0.0_pvacview
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7.0.0_pvacview_dedup_code
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8.0.0_bugfix
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MHC_Class_File_Renaming
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Prioritize_IC50_Or_Percentile
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TL-MHC
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add-immunoscope
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add_pvacview_citation
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additional-filtering
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agfusion
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aggregate_allele_counts
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aggregate_inclusion_count_limit_bugfix
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aggregate_na
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aggregate_percentile
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aggregate_report
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aggregate_report_filter
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all_chunks
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allele
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anchor_docs
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anchor_types
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blast
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blast_hotfix
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calculate-rank-scores
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cmd_description
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codemeta
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compare_input_fix
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conda
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consolidate_mhcflurryel
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contribute
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coveralls
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coveralls2
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csq_proximal
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dependabot/pip/docs/setuptools-78.1.1
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docs
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docs_sorting
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downstream_sequence_length
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el_only
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epitope_length
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epitope_length2
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example_data
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example_data_6.0.0a10
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export_header_row
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figure
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filter_docs
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fix-1366
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fix-pvacsplice-help
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fix/remove-pdb-debugger
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fix_pvacvector_tmp_file_removal
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flurry_state
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frameshift
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gene_of_interest
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generate_protein_fasta
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github_ci
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gt_docs
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gt_error
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help_text
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hotfix
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hotfix_pvacbind
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hotfix_vaxrank
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ic50-sorting
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iedb
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import_cleanup
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included_df_sort
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incomplete-cds-filter
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index
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inframe_del
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insertion_fasta
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issue-1138
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issue-1298
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issue-457
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issue_1225
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issue_1236
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issue_1274
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issue_1275
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issue_1276_2
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issue_1284
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issue_1311
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issue_1322
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issue_1349
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issue_1358
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issue_1364
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issue_1385
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issue_1386
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issues/1142
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issues/1176
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issues/1187
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license
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malachi-docs-fix-depname
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master
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matched_wt
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matching
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merge-scripts
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mhcflurry
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mhcflurry_calls
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missing_arguments
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mixmhc2pred
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mixmhcpred
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ml_predictor3
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mouse
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mutation_column
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mutation_position
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na
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net_chop
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netchop_bugfix
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netchop_stab
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netmhciipan_version
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new_top_score_metric2
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no_aa_change
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normal_sample
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normalized_percentiles
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order_form
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ordering_bugfix
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pVACcompare_integration
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pVACvector-biotype-fix
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peptide_length
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percentile
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percentile_cutoffs
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percentile_filter
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percentile_none
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permissions
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pkg_resource
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prediction
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predictor
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proximal_generate_fasta
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pvacbind_refactor
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pvacfuse
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pvacfuse_hotfix
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pvacfuse_sorting
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pvacfuse_speedup
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pvacplice_anchor_input
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pvacsplice_addNonHumanUnittest
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pvacsplice_aggregate_report
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pvacsplice_bugfix
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pvacsplice_frameshift
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pvacsplice_generate_protein_fasta
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pvacsplice_include_nonhumanEnsemblTranscript
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pvacsplice_inputs
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pvacsplice_junction
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pvacsplice_troubleshoot_issue1223
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pvacsplice_troubleshoot_proteinfasta
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pvacsplice_unsupported_aas
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pvacvector
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pvacvector_args
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pvacvector_bug
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pvacvector_bugfix
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pvacvector_clipping
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pvacvector_hotfix
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pvacvector_params
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pvacvector_percentile
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pvacvector_tests
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pvacview_bugfix
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pvacview_help
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pvacview_incl_best_peptide
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pvacview_index
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pvacview_port
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pvafuse_error
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py38
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python_version
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raise
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read_support
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ref_match
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ref_prot
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ref_prot_missing_sequence
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ref_proteome
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remove_combined
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remove_condensed
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remove_integrate_neo
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revert-659-remove_integrate_neo
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rtd
-
selected_junctions
-
speedup
-
staging
-
summary_percentiles
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tensorflow
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test_bug
-
test_coverage
-
test_optimization
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test_speedup_staging
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tier_docs
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tier_list
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tlimm_percentile
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top_score_filter
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top_score_metric2
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top_score_metric2_2
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travis_hotfix
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tsm2_bugfix
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unsupported_aas
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update_tiers
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update_tiers_bugfix
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v1.5.10
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v1.5.11
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v1.5.12
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v1.5.13
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v1.5.14
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v1.5.6
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v1.5.7
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v1.5.8
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v1.5.9
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v2.0.0
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v2.0.1
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v2.0.2
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valid_alleles_length
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valid_alleles_species
-
vaxrank
-
vector-biotype-fix
-
vep
CHANGE BRANCH
x
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test_speedup
- 1.5.14
- 6.0.0_release
- 6.0.0a11_bugfixes
- 7.0.0
- 7.0.0_admin
- 7.0.0_bugfixes
- 7.0.0_docs
- 7.0.0_example_data
- 7.0.0_failing_test
- 7.0.0_logging
- 7.0.0_ml_predictor
- 7.0.0_normalized_percentiles_length_agnostic
- 7.0.0_pvacview
- 7.0.0_pvacview_dedup_code
- 8.0.0_bugfix
- MHC_Class_File_Renaming
- Prioritize_IC50_Or_Percentile
- TL-MHC
- add-immunoscope
- add_pvacview_citation
- additional-filtering
- agfusion
- aggregate_allele_counts
- aggregate_inclusion_count_limit_bugfix
- aggregate_na
- aggregate_percentile
- aggregate_report
- aggregate_report_filter
- all_chunks
- allele
- anchor_docs
- anchor_types
- blast
- blast_hotfix
- calculate-rank-scores
- cmd_description
- codemeta
- compare_input_fix
- conda
- consolidate_mhcflurryel
- contribute
- coveralls
- coveralls2
- csq_proximal
- dependabot/pip/docs/setuptools-78.1.1
- docs
- docs_sorting
- downstream_sequence_length
- el_only
- epitope_length
- epitope_length2
- example_data
- example_data_6.0.0a10
- export_header_row
- figure
- filter_docs
- fix-1366
- fix-pvacsplice-help
- fix/remove-pdb-debugger
- fix_pvacvector_tmp_file_removal
- flurry_state
- frameshift
- gene_of_interest
- generate_protein_fasta
- github_ci
- gt_docs
- gt_error
- help_text
- hotfix
- hotfix_pvacbind
- hotfix_vaxrank
- ic50-sorting
- iedb
- import_cleanup
- included_df_sort
- incomplete-cds-filter
- index
- inframe_del
- insertion_fasta
- issue-1138
- issue-1298
- issue-457
- issue_1225
- issue_1236
- issue_1274
- issue_1275
- issue_1276_2
- issue_1284
- issue_1311
- issue_1322
- issue_1349
- issue_1358
- issue_1364
- issue_1385
- issue_1386
- issues/1142
- issues/1176
- issues/1187
- license
- malachi-docs-fix-depname
- master
- matched_wt
- matching
- merge-scripts
- mhcflurry
- mhcflurry_calls
- missing_arguments
- mixmhc2pred
- mixmhcpred
- ml_predictor3
- mouse
- mutation_column
- mutation_position
- na
- net_chop
- netchop_bugfix
- netchop_stab
- netmhciipan_version
- new_top_score_metric2
- no_aa_change
- normal_sample
- normalized_percentiles
- order_form
- ordering_bugfix
- pVACcompare_integration
- pVACvector-biotype-fix
- peptide_length
- percentile
- percentile_cutoffs
- percentile_filter
- percentile_none
- permissions
- pkg_resource
- prediction
- predictor
- proximal_generate_fasta
- pvacbind_refactor
- pvacfuse
- pvacfuse_hotfix
- pvacfuse_sorting
- pvacfuse_speedup
- pvacplice_anchor_input
- pvacsplice_addNonHumanUnittest
- pvacsplice_aggregate_report
- pvacsplice_bugfix
- pvacsplice_frameshift
- pvacsplice_generate_protein_fasta
- pvacsplice_include_nonhumanEnsemblTranscript
- pvacsplice_inputs
- pvacsplice_junction
- pvacsplice_troubleshoot_issue1223
- pvacsplice_troubleshoot_proteinfasta
- pvacsplice_unsupported_aas
- pvacvector
- pvacvector_args
- pvacvector_bug
- pvacvector_bugfix
- pvacvector_clipping
- pvacvector_hotfix
- pvacvector_params
- pvacvector_percentile
- pvacvector_tests
- pvacview_bugfix
- pvacview_help
- pvacview_incl_best_peptide
- pvacview_index
- pvacview_port
- pvafuse_error
- py38
- python_version
- raise
- read_support
- ref_match
- ref_prot
- ref_prot_missing_sequence
- ref_proteome
- remove_combined
- remove_condensed
- remove_integrate_neo
- revert-659-remove_integrate_neo
- rtd
- selected_junctions
- speedup
- staging
- summary_percentiles
- tensorflow
- test_bug
- test_coverage
- test_optimization
- test_speedup_staging
- tier_docs
- tier_list
- tlimm_percentile
- top_score_filter
- top_score_metric2
- top_score_metric2_2
- travis_hotfix
- tsm2_bugfix
- unsupported_aas
- update_tiers
- update_tiers_bugfix
- v1.5.10
- v1.5.11
- v1.5.12
- v1.5.13
- v1.5.14
- v1.5.6
- v1.5.7
- v1.5.8
- v1.5.9
- v2.0.0
- v2.0.1
- v2.0.2
- valid_alleles_length
- valid_alleles_species
- vaxrank
- vector-biotype-fix
- vep
coverage: 82.499%. First build
github
8853 of 10731 relevant lines covered (82.5%)
2.47 hits per line
Relevant lines Covered
10731
RELEVANT LINES
8853
COVERED LINES
2.47
HITS PER LINE
Source Files on test_speedup
Recent builds
| Builds | Branch | Commit | Type | Ran | Committer | Via | Coverage |
|---|---|---|---|---|---|---|---|
| 29591283832 | test_speedup | Merge 68546d2f7 into 4abc61b8b | Pull #1426 |  web-flow |
github |
82.5 |
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| 29530112677 | test_speedup | Merge 68546d2f7 into 4abc61b8b | Pull #1426 | web-flow |
github |
82.5 |
|
| 29530013187 | test_speedup | Merge 68546d2f7 into 4abc61b8b | Pull #1426 | web-flow |
github |
82.5 |
|
| 29528121943 | test_speedup | Speed up pvacsplice test | push |  susannasiebert |
github |
82.5 |
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| 29525911173 | test_speedup | Speed up load gtf tests | push | susannasiebert |
github |
82.5 |
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| 29518968316 | test_speedup | Speed up junction to fasta tests | push | susannasiebert |
github |
82.5 |
|
| 29509770169 | test_speedup | WIP speed up pvacsplice generate protein fasta tests | push | susannasiebert |
github |
82.5 |
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| 29513369373 | test_speedup | WIP speed up pvacsplice generate protein fasta tests | push | susannasiebert |
github |
82.5 |
|
| 29504650353 | test_speedup | Use pytest for GitHub action running to get time used on each test | push | susannasiebert |
github |
82.5 |