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griffithlab / pVACtools
83%
master: 86%

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LAST BUILD BRANCH: mixmhcpred
DEFAULT BRANCH: master
Repo Added 25 Jul 2019 03:00PM UTC
Files 159
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LAST BUILD ON BRANCH csq_proximal
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  • csq_proximal
  • 1.5.14
  • MHC_Class_File_Renaming
  • Prioritize_IC50_Or_Percentile
  • add_pvacview_citation
  • additional-filtering
  • agfusion
  • aggregate_allele_counts
  • aggregate_inclusion_count_limit_bugfix
  • aggregate_na
  • aggregate_percentile
  • aggregate_report
  • anchor_types
  • blast
  • blast_hotfix
  • cmd_description
  • compare_input_fix
  • conda
  • contribute
  • coveralls
  • coveralls2
  • dependabot/pip/docs/setuptools-78.1.1
  • docs
  • epitope_length
  • epitope_length2
  • export_header_row
  • figure
  • filter_docs
  • fix-pvacsplice-help
  • fix_pvacvector_tmp_file_removal
  • frameshift
  • gene_of_interest
  • github_ci
  • gt_docs
  • gt_error
  • hotfix
  • hotfix_pvacbind
  • hotfix_vaxrank
  • ic50-sorting
  • iedb
  • incomplete-cds-filter
  • index
  • inframe_del
  • insertion_fasta
  • issue-1138
  • issue-1298
  • issue-457
  • issue_1225
  • issue_1236
  • issue_1274
  • issue_1275
  • issue_1276_2
  • issue_1284
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  • mhcflurry
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  • mixmhcpred
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  • mutation_position
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  • netchop_stab
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  • pVACcompare_integration
  • pVACvector-biotype-fix
  • peptide_length
  • percentile
  • percentile_filter
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  • permissions
  • proximal_generate_fasta
  • pvacfuse
  • pvacfuse_hotfix
  • pvacfuse_sorting
  • pvacfuse_speedup
  • pvacplice_anchor_input
  • pvacsplice_addNonHumanUnittest
  • pvacsplice_aggregate_report
  • pvacsplice_bugfix
  • pvacsplice_frameshift
  • pvacsplice_generate_protein_fasta
  • pvacsplice_include_nonhumanEnsemblTranscript
  • pvacsplice_troubleshoot_issue1223
  • pvacsplice_troubleshoot_proteinfasta
  • pvacsplice_unsupported_aas
  • pvacvector
  • pvacvector_args
  • pvacvector_bug
  • pvacvector_bugfix
  • pvacvector_clipping
  • pvacvector_hotfix
  • pvacvector_params
  • pvacview_bugfix
  • pvacview_help
  • pvacview_incl_best_peptide
  • pvacview_index
  • pvafuse_error
  • py38
  • python_version
  • raise
  • read_support
  • ref_match
  • ref_prot
  • ref_prot_missing_sequence
  • remove_condensed
  • remove_integrate_neo
  • revert-659-remove_integrate_neo
  • rtd
  • selected_junctions
  • speedup
  • staging
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  • test_bug
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  • tier_docs
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  • v1.5.10
  • v1.5.11
  • v1.5.12
  • v1.5.13
  • v1.5.14
  • v1.5.6
  • v1.5.7
  • v1.5.8
  • v1.5.9
  • v2.0.0
  • v2.0.1
  • v2.0.2
  • valid_alleles_species
  • vaxrank
  • vector-biotype-fix
  • vep

pending completion
1668

Pull #602

travis-ci

web-flow
<a href="https://github.com/griffithlab/pVACtools/commit/<a class=hub.com/griffithlab/pVACtools/commit/<a class="double-link" href="https://git"><a class=hub.com/griffithlab/pVACtools/commit/<a class="double-link" href="https://git"><a class=hub.com/griffithlab/pVACtools/commit/<a class="double-link" href="https://git"><a class=hub.com/griffithlab/pVACtools/commit/<a class="double-link" href="https://git"><a class=hub.com/griffithlab/pVACtools/commit/91d204767ba30f92628ab3d544c4a248a52a6289">91d204767">&lt;a href=&quot;https://github.com/griffithlab/pVACtools/commit/</a><a class="double-link" href="https://github.com/griffithlab/pVACtools/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://git">&lt;a class=</a>hub.com/griffithlab/pVACtools/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://git">&lt;a class=</a>hub.com/griffithlab/pVACtools/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://git">&lt;a class=</a>hub.com/griffithlab/pVACtools/commit/91d204767ba30f92628ab3d544c4a248a52a6289">91d204767</a><a href="https://github.com/griffithlab/pVACtools/commit/91d204767ba30f92628ab3d544c4a248a52a6289">&lt;a href=&quot;https://github.com/griffithlab/pVACtools/commit/91d204767ba30f92628ab3d544c4a248a52a6289&quot;&gt;&amp;quot;&amp;gt;&amp;amp;lt;a href=&amp;amp;quot;https://github.com/griffithlab/pVACtools/commit/&amp;lt;/a&amp;gt;&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://github.com/griffithlab/pVACtools/commit/&amp;amp;lt;a class=&amp;amp;quot;double-link&amp;amp;quot; href=&amp;amp;quot;https://git&amp;quot;&amp;gt;&amp;amp;lt;a class=&amp;lt;/a&amp;gt;hub.com/griffithlab/pVACtools/commit/91d204767ba30f92628ab3d544c4a248a52a6289&amp;quot;&amp;gt;91d204767&amp;lt;/a&amp;gt;&amp;lt;a href=&amp;quot;https://github.com/griffithlab/pVACtools/commit/91d204767ba30f92628ab3d544c4a248a52a6289&amp;quot;&amp;gt;&amp;amp;lt;a href=&amp;amp;quot;https://github.com/griffithlab/pVACtools/commit/91d204767ba30f92628ab3d544c4a248&amp;lt;/a&amp;gt;a52a6289&amp;</a>quot;&gt;&amp;quot;&amp;gt;Merge &amp;lt;/a&amp;gt;&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://github.com/griffithlab/pVACtools/commit/&amp;lt;a class=&amp;quot;double-link&amp;quot; href=&amp;quot;https://github.com/griffithlab/pVACtools/commit/&lt;a class=&quot;double-link&quot; href=&quot;https://github.com/griffithlab/pVACto... (continued)
Pull Request #602: Find the proximal variant transcript that matches the SVOI's transcript instead of just picking the first one

9 of 9 new or added lines in 1 file covered. (100.0%)

4240 of 5136 relevant lines covered (82.55%)

2.48 hits per line

Relevant lines Covered
Build:
Build:
5136 RELEVANT LINES 4240 COVERED LINES
2.48 HITS PER LINE
Source Files on csq_proximal
  • Tree
  • List 73
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1668 csq_proximal <a href="https://github.com/griffithlab/pVACtools/commit/91d204767">&lt;a href=&quot;https://github.com/griffithlab/pVACtools/commit/</a><a class="double-link" href="https://github.com/griffithlab/pVACtools/commit/&l... Pull #602 14 Oct 2020 04:32PM UTC web-flow travis-ci pending completion  
1667 csq_proximal Find the proximal variant transcript that matches the SVOI's transcript instead of just picking the first one push 14 Oct 2020 04:24PM UTC susannasiebert travis-ci pending completion  
See All Builds (1412)
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