• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

Clinical-Genomics / trailblazer
0%

Build:
DEFAULT BRANCH: master
Repo Added 14 Mar 2018 08:15AM UTC
Files 0
Badge
Embed â–¾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH master
branch: master
CHANGE BRANCH
x
Reset
  • master
  • 2.1.2
  • 2.2.0
  • 2.2.0b
  • 2.2.1-beta
  • 3.0.0
  • 3.1.0
  • 3.1.1
  • 3.1.2
  • 3.1.4
  • 3.1.5
  • 3.1.6
  • 3.1.7
  • 3.2.0
  • 3.2.1
  • 3.2.2
  • 3.2.3
  • 3.2.4
  • 315-fix-analysis-status
  • 342-fix-search-bug
  • 4.0.0
  • 4.0.1
  • 4.1.0
  • 4.2.0
  • 4.3.0
  • 4.3.1
  • 4.3.2
  • 4.3.3
  • 5.0.0
  • 6.0.0
  • 6.0.3
  • 6.1.0
  • 6.1.1
  • 6.3.0
  • 6.3.1
  • 6.4.0
  • 6.4.1
  • 6.4.2
  • 6.4.3
  • 6.4.4
  • 6.4.5
  • 6.5.0
  • 6.6.0
  • 6.7.0
  • 6.7.1
  • 6.7.2
  • 6.8.0
  • 6.8.1
  • 6.8.2
  • 6.8.3
  • 6.8.4
  • 74-support-filtering-on-delivered
  • CGH_files
  • CI/add-jobs
  • MIP7.1-dev
  • Readd-nuxt-app
  • Remove-nuxt-application
  • Revert-nuxt
  • Solve-issue-nuxt
  • abstract-away-slurm-cli
  • accept-workflow-id
  • add-analysis-in-cancel
  • add-cancellable-bool-to-response
  • add-delivery-table
  • add-endpoint-error-handling
  • add-filter-on-status
  • add-git-lint
  • add-integration-tests
  • add-is-hidden-parameter
  • add-keycloak
  • add-missing-indices
  • add-missing-init-file
  • add-oauth-client
  • add-order-analysis-creation
  • add-order-to-analyses
  • add-patch-endpoint
  • add-slurm-api
  • add-slurm-api-service
  • add-slurm-cli-service
  • add-slurm-client
  • add-slurm-services
  • add-summary-endpoint
  • add-ticket-number-to-analysis
  • add-to-comment
  • add-token-verification
  • add-total-count
  • add-tower-id-to-analysis
  • add-tower-missing-file-handling
  • add-upload-jobs
  • add-user-abbreviations
  • add-user-signatures
  • add-user-verification
  • add-visible-query-param
  • add/express-qos
  • add_alembic
  • add_config_model
  • add_docker
  • add_fail_to_temp_status
  • add_flag
  • add_io_json
  • add_isort
  • add_pre_commit
  • add_qos_maintenance
  • add_ruff
  • add_wts_as_data_analysis
  • adjust-redirect
  • attempt-certs
  • befriend-balsamic
  • beta
  • cancel-analysis
  • cancel-tower-analysis-with-stored-workflow-id
  • cancel_tower
  • cancel_tower_workflow
  • case_id_again
  • centralize-tower-setup
  • cgvs-move
  • click-freeze
  • commit-before-response
  • continues-when-mip-data-is-missing
  • dependabot/npm_and_yarn/nuxt/elliptic-6.5.3
  • dependabot/npm_and_yarn/nuxt/eslint-4.18.2
  • dependabot/npm_and_yarn/nuxt/jquery-3.4.0
  • dependabot/npm_and_yarn/nuxt/jquery-3.5.0
  • dependabot/npm_and_yarn/nuxt/jquery-3.5.1
  • dependabot/npm_and_yarn/nuxt/lodash-4.17.15
  • dependabot/npm_and_yarn/nuxt/lodash-4.17.19
  • dependabot/npm_and_yarn/nuxt/lodash.template-4.5.0
  • dependabot/npm_and_yarn/nuxt/node-fetch-2.6.1
  • dependabot/pip/jinja2-3.1.5
  • dependabot/pip/werkzeug-3.0.6
  • deployment-sop
  • depr_test
  • develop
  • dockerize-cli
  • ensure-upload-jobs-are-not-overwritten
  • extract-slurm-client-error-handling
  • feat/api-queries
  • feat/better-job-names
  • feat/cancel-by-name
  • feat/deploy_to_pypi
  • feat/detach-tb-3
  • feat/dockerize
  • feat/failtext-in-column
  • feat/get-analyses-by-comment
  • feat/integrate-balsamic-tb
  • feat/query-by-comment
  • feat/remove-comment
  • feat/remove-confighandler
  • feat_add_mipflag
  • filter-rsync-analyses
  • filter-type-of-analyses
  • fix-add-pendibg
  • fix-alembic-migration
  • fix-balsamic-filter
  • fix-balsamic-filtering
  • fix-broken-dependencies
  • fix-cancel
  • fix-cancel-response
  • fix-cancelled-bug
  • fix-circular-import
  • fix-cli-images
  • fix-comment
  • fix-delete-comment
  • fix-delivered
  • fix-enum-spelling
  • fix-image-vulnerabilities
  • fix-install-workflow
  • fix-job-id-parsing
  • fix-job-serialization
  • fix-jobs-missing-in-response
  • fix-latest-analysis
  • fix-logging
  • fix-marshmallow-validation
  • fix-microsalt
  • fix-microsalt-bug
  • fix-missing-cancellable-field
  • fix-missing-ticket
  • fix-missing-type
  • fix-naming
  • fix-pydantic-warning
  • fix-pypi
  • fix-refresh-token
  • fix-ruff
  • fix-scaling
  • fix-scan-action
  • fix-slurm-api-interaction
  • fix-slurm-client
  • fix-slurm-job-info
  • fix-slurm-model
  • fix-smells
  • fix-tower-bug
  • fix-tower-status-bug
  • fix-types
  • fix-upload-job-update
  • fix/cg-clean-mipauto-mip-backwards-compat
  • fix/decouple-trailblazer-google
  • fix/force-delete
  • fix/googleuser-change
  • fix/namespace
  • fix/parse_configs_ambiguously
  • fix/remove-em-as-codeowner
  • fix/remove-pytest-from-prod-deps
  • fix/set-analysis-completed-comment
  • fix_analysis_failed_jobs
  • fix_analysis_failed_jobs_api
  • fix_delete_analysis
  • fix_long_timestamps
  • fix_looponfailroots
  • fix_server
  • fix_status_null
  • fix_time_elapsed
  • fix_time_tower
  • fix_tower_timestamp_conversion
  • fix_wrong_tb_status
  • fix_yaml
  • fix_zerodivision
  • fixes-more-obsolete-dependencies
  • fixes-obsolete-dependencies
  • force-cleaning-and-deletion
  • get_analysis
  • github_actions
  • github_actions_2
  • github_actions_3
  • gustav_test_branch
  • handle-failed-login
  • improve-env-name
  • improve-logging-for-failing-scan
  • improve-patch
  • include-case-ids-in-summary
  • include-hidden-when-searching
  • include-order-id-in-analysis-response
  • include-upload-jobs-in-analysis-response
  • make-abbreviation-non-nullable
  • make-delivered-fields-nullable
  • make_config_path_optional
  • migtate_add_user_to_createhandler
  • mip-dna-v8.0
  • mip-dna-v8.2
  • mip-pedigree
  • mip-rd-rna
  • mip6
  • mip7-command
  • mip_family_id_compatibility
  • mip_files
  • mip_parse_sampleinfo
  • missing-qccollect
  • modify_travis
  • move-rsync-filtering
  • move_start_of_mip_to_cg
  • mvp-balsamic
  • parse_qcmetrics
  • patch-analysis-endpoint
  • patch-pending-tower-analyses
  • patch-scan
  • patch-search
  • patch-status-calc
  • patch-status-update
  • patch-update
  • patch-update-visibility
  • patch-upload-jobs
  • pin-docker-base-image-version
  • progress_as_fraction
  • quick_fix_tw_status
  • rank_model_version_from_get_trending
  • reduce-action-duplication
  • refaactor-get-analyses-in-ls-cmd
  • refactor-analyses
  • refactor-analyses-filtering
  • refactor-api-layer
  • refactor-data_analysis-and-pipeline-to-workflow
  • refactor-endpoints
  • refactor-fastq-workflow
  • refactor-linters
  • refactor-sql-filter-function-names
  • refactor-to-PEP-0663
  • refactor-to-PEP-604
  • refactor-to-pep-0585
  • refactor-tower-client
  • refactor_add_comment
  • refactor_add_pending_analysis
  • refactor_add_user
  • refactor_basehandler
  • refactor_cancel_analysis
  • refactor_cancel_slurm_job
  • refactor_constants
  • refactor_date_module
  • refactor_delete_analysis
  • refactor_get_analysis
  • refactor_get_latest_analysis
  • refactor_job
  • refactor_job_in_update_slurm_jobs
  • refactor_mark_analyses_deleted
  • refactor_query_slurm
  • refactor_query_tower
  • refactor_query_tower_2
  • refactor_reading_squeue_output
  • refactor_set_analysis_status
  • refactor_set_analysis_uploaded
  • refactor_sql_aggregate_failed
  • refactor_sql_analysis
  • refactor_sql_archive_user
  • refactor_sql_info
  • refactor_sql_user
  • refactor_sql_users
  • refactor_update_analysis_from_slurm_output
  • refactor_update_jobs
  • refactor_update_ongoing_analyses
  • refactor_update_run_status
  • refactor_update_tower_run_status
  • refresh-token
  • remove-action
  • remove-alchy
  • remove-avatar
  • remove-balsamic-qc
  • remove-is_deleted
  • remove-pylint-config
  • remove-unused-code
  • remove-unused-endpoints
  • remove-unused-job-param
  • remove-unused-query-analyses
  • remove-unused-reformat-logic
  • remove-user-from-response
  • remove_empty_fixture_call
  • remove_get_latest_analysis_status
  • remove_is_latest_analysis_completed
  • remove_is_latest_analysis_failed
  • remove_is_latest_analysis_ongoing
  • remove_python-dateutil
  • remove_test_fixture_prefix
  • removes-mip
  • rename-family-to-case
  • rename-sars-cov-2-to-mutant
  • report-delivered-correctly
  • return-delivery-data
  • return-most-recent-failed-job
  • reverse-8-1-1
  • revert
  • revert-132-reverse-8-1-1
  • revert-507-add-token-verification
  • revert-510-add-token-verification
  • revert-68-mip-rd-rna
  • revert-latest-failed
  • revert-old
  • revert-refactoring
  • rework-delivered-counting
  • rewriting_trending_from_mip6_into_mip5
  • rm-conda-env-and-use-container
  • rm_docutils
  • rm_get_elapsed_time
  • rm_mip_start
  • rm_models_import
  • rm_pytest_yield
  • rm_sql_jobs_function
  • rm_trailblazer_check
  • rm_travis
  • rm_universal_config_option
  • rna-analysis-in-hk
  • rnafusion_support
  • scan-containers
  • set-analysis-to-fail
  • set-upload-date-fastq
  • set_status_cli
  • show-failed-last-month
  • speed-up-analyses-endpoint
  • speedup-retrieval-of-analyses
  • speedup-retrieving-latest-failed-job
  • store-multiqc
  • str-vcf
  • support-slurm-cli-or-api
  • tag-image-with-version
  • test-fix
  • test-rest-api
  • test_scope
  • test_server
  • test_server_2
  • test_server_3
  • test_server_4
  • testing-tb-on-k
  • travis-3.7
  • tw_commplete_as_qc
  • udate-werkzug
  • unfreeze_pytest
  • uodate-python
  • update-PR-template
  • update-black
  • update-black-and-ruff
  • update-bootstrap
  • update-certs
  • update-cli-image
  • update-code-owners
  • update-dependencies
  • update-deploy-instructions
  • update-jinja-2
  • update-jinja2
  • update-jquery
  • update-linters
  • update-order-status
  • update-readme
  • update-slurm-upload-jobs
  • update-upload-jobs
  • update-vue-app-packages
  • update_actions
  • update_black
  • update_code_owners
  • update_codeowners
  • update_deps
  • update_docker_actions
  • update_name_for_mip6flag
  • update_name_for_mip6flag_again
  • update_pydantic
  • update_python
  • update_pythonn
  • update_readme
  • update_ruff
  • updates-bootstrap
  • upgrade-deploy-instructions
  • upgrade-python
  • upgrade-sqlalchemy
  • upgrades-bootstrap-to-4.3.x
  • uploaded-at-column
  • usalt
  • use-abbrev
  • use-id-token
  • use-latest-analysis
  • use-poetry
  • use-sacct
  • user-endpoints

18 Dec 2025 12:35PM UTC coverage: 0.0% (-87.7%) from 87.746%
20337151192

push

github

web-flow
Accept empty string as config_path for slurm analyses (#524)

## Description

Raw data analyses will add an analysis with `config_path` as an empty string and `slurm` as workflow manager. Changes made to the validation [here](https://github.com/Clinical-Genomics/trailblazer/pull/523) made it so that combination was no longer allowed. This PR relaxes the rules to allow it again.

0 of 0 relevant lines covered (NaN%)

0.0 hits per line

Relevant lines Covered
Build:
Build:
0 RELEVANT LINES 0 COVERED LINES
0.0 HITS PER LINE
Source Files on master
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
20337151192 master Accept empty string as config_path for slurm analyses (#524) ## Description Raw data analyses will add an analysis with `config_path` as an empty string and `slurm` as workflow manager. Changes made to the validation [here](https://github.com/Cl... push 18 Dec 2025 12:36PM UTC web-flow github
0.0
20237019422 master Make analysis config_path optional (#523) ## Description The `config_path` of an Analysis is only used when the workflow manager is Slurm and no such file is longer being created for most Nextflow pipelines, therefore it should not be required f... push 15 Dec 2025 03:08PM UTC web-flow github
87.75
19302692594 master Add indices to job table (#520) (patch) ### Added - Index on job.job_type - Index on job.status push 12 Nov 2025 03:29PM UTC web-flow github
87.71
13236952712 master remove balsamic-qc fixture (#517) ## Description Remove a fixture entry referencing the deprecated workflow balsamic-qc push 10 Feb 2025 08:52AM UTC web-flow github
87.71
13027391255 master feat(update): Jinja2 (#514) ### Changed - update-jinja-2 push 29 Jan 2025 08:33AM UTC web-flow github
87.71
12984427736 master Patch pending tower analyses (#506) ## Description ### Added - Two tests. ### Changed - The status should now come from Tower. We are not checking if there are no jobs in analysis with Tower as manager. ### Fixed - Tower analys... push 27 Jan 2025 08:01AM UTC web-flow github
87.71
12742866067 master feat(user verification) (#513) (patch) # Description Fix tb auth push 13 Jan 2025 07:58AM UTC web-flow github
87.62
12705747260 master Revert "Add token verification (#510) (minor)" (#512) This reverts commit 82f327b3a. push 10 Jan 2025 08:16AM UTC web-flow github
88.24
12685788488 master Add token verification (#510) (minor) # Descrription add trailblazer token verification push 09 Jan 2025 07:59AM UTC web-flow github
87.57
12653228821 master Revert "feat( user token verification) (#507) (minor)" (#509) This reverts commit 21cfe5188. push 07 Jan 2025 02:22PM UTC web-flow github
88.24
See All Builds (2373)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc