Clinical-Genomics / trailblazer
88%

DEFAULT BRANCH: master
Repo Added
Files 114
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH master
branch: master
CHANGE BRANCH
x

coverage: 87.803% (-0.1%) from 87.913%
Relevant lines Covered
2394 RELEVANT LINES 2102 COVERED LINES
0.88 HITS PER LINE
Source Files on master

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
23847949400 master accept on-behalf-of header (#527)(patch) ## Description Add support for authentication on behalf of a valid user To be merged at the same time as https://github.com/Clinical-Genomics/cg/pull/4976 ### Added - Support for authentication on behal... push web-flow github
87.8
23787795332 master Fix trailblazer to commit all or none (#528) (patch) ## Description The update handler commits every time an entry is modified. For the functions regarding updating analyses, we moved the commit calls to the service layer, so that we could do a f... push web-flow github
87.91
23184085171 master Change tower mapping of status: unknown, to Error instead of failed (#526) (patch) ### Changed - Seqera platform status unknown is now translated tb status Error instead of Failed ---- Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@user... push web-flow github
87.75
23008243668 master update type of exit attribute in TowerTask from str to int (#525) ## Description The Tower response for endpoint `/workflow/{workflowId}/tasks` gives an attribute `exit` as an int, but the model that parses the response expects a str. This PR cha... push web-flow github
87.75
20337151192 master Accept empty string as config_path for slurm analyses (#524) ## Description Raw data analyses will add an analysis with `config_path` as an empty string and `slurm` as workflow manager. Changes made to the validation [here](https://github.com/Cl... push web-flow github
0.0
20237019422 master Make analysis config_path optional (#523) ## Description The `config_path` of an Analysis is only used when the workflow manager is Slurm and no such file is longer being created for most Nextflow pipelines, therefore it should not be required f... push web-flow github
87.75
19302692594 master Add indices to job table (#520) (patch) ### Added - Index on job.job_type - Index on job.status push web-flow github
87.71
13236952712 master remove balsamic-qc fixture (#517) ## Description Remove a fixture entry referencing the deprecated workflow balsamic-qc push web-flow github
87.71
13027391255 master feat(update): Jinja2 (#514) ### Changed - update-jinja-2 push web-flow github
87.71
12984427736 master Patch pending tower analyses (#506) ## Description ### Added - Two tests. ### Changed - The status should now come from Tower. We are not checking if there are no jobs in analysis with Tower as manager. ### Fixed - Tower analys... push web-flow github
87.71
See All Builds (2401)