Clinical-Genomics / trailblazer

91%

master: 88%

LAST BUILD ON BRANCH abstract-away-slurm-cli

branch: abstract-away-slurm-cli

CHANGE BRANCH

x

Reset

• abstract-away-slurm-cli
• 2.1.2
• 2.2.0
• 2.2.0b
• 2.2.1-beta
• 3.0.0
• 3.1.0
• 3.1.1
• 3.1.2
• 3.1.4
• 3.1.5
• 3.1.6
• 3.1.7
• 3.2.0
• 3.2.1
• 3.2.2
• 3.2.3
• 3.2.4
• 315-fix-analysis-status
• 342-fix-search-bug
• 4.0.0
• 4.0.1
• 4.1.0
• 4.2.0
• 4.3.0
• 4.3.1
• 4.3.2
• 4.3.3
• 5.0.0
• 6.0.0
• 6.0.3
• 6.1.0
• 6.1.1
• 6.3.0
• 6.3.1
• 6.4.0
• 6.4.1
• 6.4.2
• 6.4.3
• 6.4.4
• 6.4.5
• 6.5.0
• 6.6.0
• 6.7.0
• 6.7.1
• 6.7.2
• 6.8.0
• 6.8.1
• 6.8.2
• 6.8.3
• 6.8.4
• 74-support-filtering-on-delivered
• CGH_files
• CI/add-jobs
• MIP7.1-dev
• Readd-nuxt-app
• Remove-nuxt-application
• Revert-nuxt
• Solve-issue-nuxt
• accept-workflow-id
• add-analysis-in-cancel
• add-cancellable-bool-to-response
• add-delivery-table
• add-endpoint-error-handling
• add-filter-on-status
• add-git-lint
• add-integration-tests
• add-is-hidden-parameter
• add-keycloak
• add-missing-indices
• add-missing-init-file
• add-oauth-client
• add-order-analysis-creation
• add-order-to-analyses
• add-patch-endpoint
• add-slurm-api
• add-slurm-api-service
• add-slurm-cli-service
• add-slurm-client
• add-slurm-services
• add-summary-endpoint
• add-ticket-number-to-analysis
• add-to-comment
• add-token-verification
• add-total-count
• add-tower-id-to-analysis
• add-tower-missing-file-handling
• add-upload-jobs
• add-user-abbreviations
• add-user-signatures
• add-user-verification
• add-visible-query-param
• add/express-qos
• add_alembic
• add_config_model
• add_docker
• add_fail_to_temp_status
• add_flag
• add_io_json
• add_isort
• add_pre_commit
• add_qos_maintenance
• add_ruff
• add_wts_as_data_analysis
• adjust-redirect
• attempt-certs
• befriend-balsamic
• beta
• cancel-analysis
• cancel-tower-analysis-with-stored-workflow-id
• cancel_tower
• cancel_tower_workflow
• case_id_again
• centralize-tower-setup
• cgvs-move
• click-freeze
• commit-before-response
• continues-when-mip-data-is-missing
• dependabot/npm_and_yarn/nuxt/elliptic-6.5.3
• dependabot/npm_and_yarn/nuxt/eslint-4.18.2
• dependabot/npm_and_yarn/nuxt/jquery-3.4.0
• dependabot/npm_and_yarn/nuxt/jquery-3.5.0
• dependabot/npm_and_yarn/nuxt/jquery-3.5.1
• dependabot/npm_and_yarn/nuxt/lodash-4.17.15
• dependabot/npm_and_yarn/nuxt/lodash-4.17.19
• dependabot/npm_and_yarn/nuxt/lodash.template-4.5.0
• dependabot/npm_and_yarn/nuxt/node-fetch-2.6.1
• dependabot/pip/jinja2-3.1.5
• dependabot/pip/werkzeug-3.0.6
• deployment-sop
• depr_test
• develop
• dockerize-cli
• ensure-upload-jobs-are-not-overwritten
• extract-slurm-client-error-handling
• feat/api-queries
• feat/better-job-names
• feat/cancel-by-name
• feat/deploy_to_pypi
• feat/detach-tb-3
• feat/dockerize
• feat/failtext-in-column
• feat/get-analyses-by-comment
• feat/integrate-balsamic-tb
• feat/query-by-comment
• feat/remove-comment
• feat/remove-confighandler
• feat_add_mipflag
• filter-rsync-analyses
• filter-type-of-analyses
• fix-add-pendibg
• fix-alembic-migration
• fix-balsamic-filter
• fix-balsamic-filtering
• fix-broken-dependencies
• fix-cancel
• fix-cancel-response
• fix-cancelled-bug
• fix-circular-import
• fix-cli-images
• fix-comment
• fix-delete-comment
• fix-delivered
• fix-enum-spelling
• fix-image-vulnerabilities
• fix-install-workflow
• fix-job-id-parsing
• fix-job-serialization
• fix-jobs-missing-in-response
• fix-latest-analysis
• fix-logging
• fix-marshmallow-validation
• fix-microsalt
• fix-microsalt-bug
• fix-missing-cancellable-field
• fix-missing-ticket
• fix-missing-type
• fix-naming
• fix-pydantic-warning
• fix-pypi
• fix-refresh-token
• fix-ruff
• fix-scaling
• fix-scan-action
• fix-slurm-api-interaction
• fix-slurm-client
• fix-slurm-job-info
• fix-slurm-model
• fix-smells
• fix-tower-bug
• fix-tower-status-bug
• fix-types
• fix-upload-job-update
• fix/cg-clean-mipauto-mip-backwards-compat
• fix/decouple-trailblazer-google
• fix/force-delete
• fix/googleuser-change
• fix/namespace
• fix/parse_configs_ambiguously
• fix/remove-em-as-codeowner
• fix/remove-pytest-from-prod-deps
• fix/set-analysis-completed-comment
• fix_analysis_failed_jobs
• fix_analysis_failed_jobs_api
• fix_delete_analysis
• fix_long_timestamps
• fix_looponfailroots
• fix_server
• fix_status_null
• fix_time_elapsed
• fix_time_tower
• fix_tower_timestamp_conversion
• fix_wrong_tb_status
• fix_yaml
• fix_zerodivision
• fixes-more-obsolete-dependencies
• fixes-obsolete-dependencies
• force-cleaning-and-deletion
• get_analysis
• github_actions
• github_actions_2
• github_actions_3
• gustav_test_branch
• handle-failed-login
• improve-env-name
• improve-logging-for-failing-scan
• improve-patch
• include-case-ids-in-summary
• include-hidden-when-searching
• include-order-id-in-analysis-response
• include-upload-jobs-in-analysis-response
• make-abbreviation-non-nullable
• make-delivered-fields-nullable
• make_config_path_optional
• master
• migtate_add_user_to_createhandler
• mip-dna-v8.0
• mip-dna-v8.2
• mip-pedigree
• mip-rd-rna
• mip6
• mip7-command
• mip_family_id_compatibility
• mip_files
• mip_parse_sampleinfo
• missing-qccollect
• modify_travis
• move-rsync-filtering
• move_start_of_mip_to_cg
• mvp-balsamic
• parse_qcmetrics
• patch-analysis-endpoint
• patch-pending-tower-analyses
• patch-scan
• patch-search
• patch-status-calc
• patch-status-update
• patch-update
• patch-update-visibility
• patch-upload-jobs
• pin-docker-base-image-version
• progress_as_fraction
• quick_fix_tw_status
• rank_model_version_from_get_trending
• reduce-action-duplication
• refaactor-get-analyses-in-ls-cmd
• refactor-analyses
• refactor-analyses-filtering
• refactor-api-layer
• refactor-data_analysis-and-pipeline-to-workflow
• refactor-endpoints
• refactor-fastq-workflow
• refactor-linters
• refactor-sql-filter-function-names
• refactor-to-PEP-0663
• refactor-to-PEP-604
• refactor-to-pep-0585
• refactor-tower-client
• refactor_add_comment
• refactor_add_pending_analysis
• refactor_add_user
• refactor_basehandler
• refactor_cancel_analysis
• refactor_cancel_slurm_job
• refactor_constants
• refactor_date_module
• refactor_delete_analysis
• refactor_get_analysis
• refactor_get_latest_analysis
• refactor_job
• refactor_job_in_update_slurm_jobs
• refactor_mark_analyses_deleted
• refactor_query_slurm
• refactor_query_tower
• refactor_query_tower_2
• refactor_reading_squeue_output
• refactor_set_analysis_status
• refactor_set_analysis_uploaded
• refactor_sql_aggregate_failed
• refactor_sql_analysis
• refactor_sql_archive_user
• refactor_sql_info
• refactor_sql_user
• refactor_sql_users
• refactor_update_analysis_from_slurm_output
• refactor_update_jobs
• refactor_update_ongoing_analyses
• refactor_update_run_status
• refactor_update_tower_run_status
• refresh-token
• remove-action
• remove-alchy
• remove-avatar
• remove-balsamic-qc
• remove-is_deleted
• remove-pylint-config
• remove-unused-code
• remove-unused-endpoints
• remove-unused-job-param
• remove-unused-query-analyses
• remove-unused-reformat-logic
• remove-user-from-response
• remove_empty_fixture_call
• remove_get_latest_analysis_status
• remove_is_latest_analysis_completed
• remove_is_latest_analysis_failed
• remove_is_latest_analysis_ongoing
• remove_python-dateutil
• remove_test_fixture_prefix
• removes-mip
• rename-family-to-case
• rename-sars-cov-2-to-mutant
• report-delivered-correctly
• return-delivery-data
• return-most-recent-failed-job
• reverse-8-1-1
• revert
• revert-132-reverse-8-1-1
• revert-507-add-token-verification
• revert-510-add-token-verification
• revert-68-mip-rd-rna
• revert-latest-failed
• revert-old
• revert-refactoring
• rework-delivered-counting
• rewriting_trending_from_mip6_into_mip5
• rm-conda-env-and-use-container
• rm_docutils
• rm_get_elapsed_time
• rm_mip_start
• rm_models_import
• rm_pytest_yield
• rm_sql_jobs_function
• rm_trailblazer_check
• rm_travis
• rm_universal_config_option
• rna-analysis-in-hk
• rnafusion_support
• scan-containers
• set-analysis-to-fail
• set-upload-date-fastq
• set_status_cli
• show-failed-last-month
• speed-up-analyses-endpoint
• speedup-retrieval-of-analyses
• speedup-retrieving-latest-failed-job
• store-multiqc
• str-vcf
• support-slurm-cli-or-api
• tag-image-with-version
• test-fix
• test-rest-api
• test_scope
• test_server
• test_server_2
• test_server_3
• test_server_4
• testing-tb-on-k
• travis-3.7
• tw_commplete_as_qc
• udate-werkzug
• unfreeze_pytest
• uodate-python
• update-PR-template
• update-black
• update-black-and-ruff
• update-bootstrap
• update-certs
• update-cli-image
• update-code-owners
• update-dependencies
• update-deploy-instructions
• update-jinja-2
• update-jinja2
• update-jquery
• update-linters
• update-order-status
• update-readme
• update-slurm-upload-jobs
• update-upload-jobs
• update-vue-app-packages
• update_actions
• update_black
• update_code_owners
• update_codeowners
• update_deps
• update_docker_actions
• update_name_for_mip6flag
• update_name_for_mip6flag_again
• update_pydantic
• update_python
• update_pythonn
• update_readme
• update_ruff
• updates-bootstrap
• upgrade-deploy-instructions
• upgrade-python
• upgrade-sqlalchemy
• upgrades-bootstrap-to-4.3.x
• uploaded-at-column
• usalt
• use-abbrev
• use-id-token
• use-latest-analysis
• use-poetry
• use-sacct
• user-endpoints

Build # 8891513329

Build Type

Pull #423

github

Committed by seallard

Commit Message

Add single status check

Pull Request Pull Request #423: Refactor logic for updating analyses

Run Details

110 of 122 new or added lines in 14 files covered. (90.16%)

2222 of 2442 relevant lines covered (90.99%)

0.91 hits per line