Clinical-Genomics / trailblazer

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• fix_looponfailroots
• mip6
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• refactor_get_latest_analysis
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• remove_test_fixture_prefix
• refactor_cancel_analysis
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• refactor_set_analysis_uploaded
• refactor_add_comment
• refactor_delete_analysis
• refactor_query_tower
• update_ruff
• refactor_update_analysis_from_slurm_output
• fix_long_timestamps
• cancel_tower
• refactor_update_ongoing_analyses
• refactor_query_tower_2
• gustav_test_branch
• refactor_update_run_status
• refactor_update_tower_run_status
• refaactor-get-analyses-in-ls-cmd
• remove-unused-query-analyses
• refactor-analyses
• fix-enum-spelling
• refactor_basehandler
• remove-alchy
• patch-analysis-endpoint
• upgrade-sqlalchemy
• commit-before-response
• fix-smells
• upgrade-python
• speedup-retrieval-of-analyses
• speed-up-analyses-endpoint
• refactor-to-pep-0585
• refactor-to-PEP-604
• 315-fix-analysis-status
• testing-tb-on-k
• refactor-to-PEP-0663
• patch-update-visibility
• patch-update
• return-most-recent-failed-job
• speedup-retrieving-latest-failed-job
• revert-latest-failed
• fix-scaling
• add-integration-tests
• update-black-and-ruff
• rename-family-to-case
• add-total-count
• remove-is_deleted
• include-hidden-when-searching
• fix-delete-comment
• improve-logging-for-failing-scan
• fix-logging
• 342-fix-search-bug
• refactor-api-layer
• remove-user-from-response
• scan-containers
• remove-unused-endpoints
• fix-image-vulnerabilities
• fix-jobs-missing-in-response
• fix-ruff
• fix-scan-action
• remove-action
• add-slurm-client
• rename-sars-cov-2-to-mutant
• support-slurm-cli-or-api
• revert
• add-slurm-services
• fix-slurm-model
• fix-slurm-job-info
• add-slurm-cli-service
• add-upload-jobs
• remove-unused-job-param
• update-slurm-upload-jobs
• update-black
• remove-avatar
• remove-pylint-config
• include-upload-jobs-in-analysis-response
• fix-alembic-migration
• fix-upload-job-update
• update-upload-jobs
• test-rest-api
• fix-slurm-client
• add-missing-init-file
• ensure-upload-jobs-are-not-overwritten
• refactor-endpoints
• fix-circular-import
• add-order-to-analyses
• add-filter-on-status
• add-order-analysis-creation
• fix-add-pendibg
• fix-missing-ticket
• fix-missing-type
• refactor-data_analysis-and-pipeline-to-workflow
• fix-job-serialization
• fix-balsamic-filtering
• patch-scan
• add-patch-endpoint
• add-summary-endpoint
• improve-patch
• refactor-sql-filter-function-names
• add-oauth-client
• fix-balsamic-filter
• refresh-token
• fix-naming
• improve-env-name
• adjust-redirect
• add-delivery-table
• use-id-token
• fix-refresh-token
• return-delivery-data
• 74-support-filtering-on-delivered
• refactor-analyses-filtering
• patch-search
• fix-delivered
• use-latest-analysis
• make-delivered-fields-nullable
• filter-rsync-analyses
• abstract-away-slurm-cli
• report-delivered-correctly
• move-rsync-filtering
• rework-delivered-counting
• update-order-status
• dockerize-cli
• revert-old
• fix-job-id-parsing
• add-slurm-api-service
• upgrade-deploy-instructions
• patch-upload-jobs
• fix-tower-status-bug
• fix-tower-bug
• fix-cancelled-bug
• fix-microsalt-bug
• fix-microsalt
• tag-image-with-version
• reduce-action-duplication
• fix-cli-images
• test-fix
• update-deploy-instructions
• add-to-comment
• update-cli-image
• add-slurm-api
• fix-slurm-api-interaction
• include-case-ids-in-summary
• add-user-abbreviations
• centralize-tower-setup
• add-user-signatures
• make-abbreviation-non-nullable
• use-abbrev
• set-upload-date-fastq
• add-visible-query-param
• filter-type-of-analyses
• refactor-tower-client
• update-linters
• remove-unused-reformat-logic
• include-order-id-in-analysis-response
• add-endpoint-error-handling
• cancel-analysis
• fix-cancel-response
• revert-refactoring
• patch-status-calc
• add-analysis-in-cancel
• extract-slurm-client-error-handling
• add-tower-missing-file-handling
• patch-status-update
• add-tower-id-to-analysis
• accept-workflow-id
• cancel-tower-analysis-with-stored-workflow-id
• add-cancellable-bool-to-response
• fix-missing-cancellable-field
• remove-unused-code
• fix-cancel
• add-is-hidden-parameter
• use-poetry
• refactor-fastq-workflow
• fix-pypi
• rm-conda-env-and-use-container
• uodate-python
• fix-pydantic-warning
• dependabot/pip/werkzeug-3.0.6
• udate-werkzug
• refactor-linters

Merge branch 'master' into fix_looponfailroots