• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

Clinical-Genomics / trailblazer
0%

Build:
DEFAULT BRANCH: master
Repo Added 14 Mar 2018 08:15AM UTC
Files 0
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH master
branch: SELECT
CHANGE BRANCH
x
  • No branch selected
  • 2.1.2
  • 2.2.0
  • 2.2.0b
  • 2.2.1-beta
  • 3.0.0
  • 3.1.0
  • 3.1.1
  • 3.1.2
  • 3.1.4
  • 3.1.5
  • 3.1.6
  • 3.1.7
  • 3.2.0
  • 3.2.1
  • 3.2.2
  • 3.2.3
  • 3.2.4
  • 315-fix-analysis-status
  • 342-fix-search-bug
  • 4.0.0
  • 4.0.1
  • 4.1.0
  • 4.2.0
  • 4.3.0
  • 4.3.1
  • 4.3.2
  • 4.3.3
  • 5.0.0
  • 6.0.0
  • 6.0.3
  • 6.1.0
  • 6.1.1
  • 6.3.0
  • 6.3.1
  • 6.4.0
  • 6.4.1
  • 6.4.2
  • 6.4.3
  • 6.4.4
  • 6.4.5
  • 6.5.0
  • 6.6.0
  • 6.7.0
  • 6.7.1
  • 6.7.2
  • 6.8.0
  • 6.8.1
  • 6.8.2
  • 6.8.3
  • 6.8.4
  • 74-support-filtering-on-delivered
  • CGH_files
  • CI/add-jobs
  • MIP7.1-dev
  • Readd-nuxt-app
  • Remove-nuxt-application
  • Revert-nuxt
  • Solve-issue-nuxt
  • abstract-away-slurm-cli
  • accept-workflow-id
  • add-analysis-in-cancel
  • add-cancellable-bool-to-response
  • add-delivery-table
  • add-endpoint-error-handling
  • add-filter-on-status
  • add-git-lint
  • add-integration-tests
  • add-is-hidden-parameter
  • add-keycloak
  • add-missing-indices
  • add-missing-init-file
  • add-oauth-client
  • add-order-analysis-creation
  • add-order-to-analyses
  • add-patch-endpoint
  • add-slurm-api
  • add-slurm-api-service
  • add-slurm-cli-service
  • add-slurm-client
  • add-slurm-services
  • add-summary-endpoint
  • add-ticket-number-to-analysis
  • add-to-comment
  • add-token-verification
  • add-total-count
  • add-tower-id-to-analysis
  • add-tower-missing-file-handling
  • add-upload-jobs
  • add-user-abbreviations
  • add-user-signatures
  • add-user-verification
  • add-visible-query-param
  • add/express-qos
  • add_alembic
  • add_config_model
  • add_docker
  • add_fail_to_temp_status
  • add_flag
  • add_io_json
  • add_isort
  • add_pre_commit
  • add_qos_maintenance
  • add_ruff
  • add_wts_as_data_analysis
  • adjust-redirect
  • attempt-certs
  • befriend-balsamic
  • beta
  • cancel-analysis
  • cancel-tower-analysis-with-stored-workflow-id
  • cancel_tower
  • cancel_tower_workflow
  • case_id_again
  • centralize-tower-setup
  • cgvs-move
  • click-freeze
  • commit-before-response
  • continues-when-mip-data-is-missing
  • dependabot/npm_and_yarn/nuxt/elliptic-6.5.3
  • dependabot/npm_and_yarn/nuxt/eslint-4.18.2
  • dependabot/npm_and_yarn/nuxt/jquery-3.4.0
  • dependabot/npm_and_yarn/nuxt/jquery-3.5.0
  • dependabot/npm_and_yarn/nuxt/jquery-3.5.1
  • dependabot/npm_and_yarn/nuxt/lodash-4.17.15
  • dependabot/npm_and_yarn/nuxt/lodash-4.17.19
  • dependabot/npm_and_yarn/nuxt/lodash.template-4.5.0
  • dependabot/npm_and_yarn/nuxt/node-fetch-2.6.1
  • dependabot/pip/jinja2-3.1.5
  • dependabot/pip/werkzeug-3.0.6
  • deployment-sop
  • depr_test
  • develop
  • dockerize-cli
  • ensure-upload-jobs-are-not-overwritten
  • extract-slurm-client-error-handling
  • feat/api-queries
  • feat/better-job-names
  • feat/cancel-by-name
  • feat/deploy_to_pypi
  • feat/detach-tb-3
  • feat/dockerize
  • feat/failtext-in-column
  • feat/get-analyses-by-comment
  • feat/integrate-balsamic-tb
  • feat/query-by-comment
  • feat/remove-comment
  • feat/remove-confighandler
  • feat_add_mipflag
  • filter-rsync-analyses
  • filter-type-of-analyses
  • fix-add-pendibg
  • fix-alembic-migration
  • fix-balsamic-filter
  • fix-balsamic-filtering
  • fix-broken-dependencies
  • fix-cancel
  • fix-cancel-response
  • fix-cancelled-bug
  • fix-circular-import
  • fix-cli-images
  • fix-comment
  • fix-delete-comment
  • fix-delivered
  • fix-enum-spelling
  • fix-image-vulnerabilities
  • fix-install-workflow
  • fix-job-id-parsing
  • fix-job-serialization
  • fix-jobs-missing-in-response
  • fix-latest-analysis
  • fix-logging
  • fix-marshmallow-validation
  • fix-microsalt
  • fix-microsalt-bug
  • fix-missing-cancellable-field
  • fix-missing-ticket
  • fix-missing-type
  • fix-naming
  • fix-pydantic-warning
  • fix-pypi
  • fix-refresh-token
  • fix-ruff
  • fix-scaling
  • fix-scan-action
  • fix-slurm-api-interaction
  • fix-slurm-client
  • fix-slurm-job-info
  • fix-slurm-model
  • fix-smells
  • fix-tower-bug
  • fix-tower-status-bug
  • fix-types
  • fix-upload-job-update
  • fix/cg-clean-mipauto-mip-backwards-compat
  • fix/decouple-trailblazer-google
  • fix/force-delete
  • fix/googleuser-change
  • fix/namespace
  • fix/parse_configs_ambiguously
  • fix/remove-em-as-codeowner
  • fix/remove-pytest-from-prod-deps
  • fix/set-analysis-completed-comment
  • fix_analysis_failed_jobs
  • fix_analysis_failed_jobs_api
  • fix_delete_analysis
  • fix_long_timestamps
  • fix_looponfailroots
  • fix_server
  • fix_status_null
  • fix_time_elapsed
  • fix_time_tower
  • fix_tower_timestamp_conversion
  • fix_wrong_tb_status
  • fix_yaml
  • fix_zerodivision
  • fixes-more-obsolete-dependencies
  • fixes-obsolete-dependencies
  • force-cleaning-and-deletion
  • get_analysis
  • github_actions
  • github_actions_2
  • github_actions_3
  • gustav_test_branch
  • handle-failed-login
  • improve-env-name
  • improve-logging-for-failing-scan
  • improve-patch
  • include-case-ids-in-summary
  • include-hidden-when-searching
  • include-order-id-in-analysis-response
  • include-upload-jobs-in-analysis-response
  • make-abbreviation-non-nullable
  • make-delivered-fields-nullable
  • make_config_path_optional
  • master
  • migtate_add_user_to_createhandler
  • mip-dna-v8.0
  • mip-dna-v8.2
  • mip-pedigree
  • mip-rd-rna
  • mip6
  • mip7-command
  • mip_family_id_compatibility
  • mip_files
  • mip_parse_sampleinfo
  • missing-qccollect
  • modify_travis
  • move-rsync-filtering
  • move_start_of_mip_to_cg
  • mvp-balsamic
  • parse_qcmetrics
  • patch-analysis-endpoint
  • patch-pending-tower-analyses
  • patch-scan
  • patch-search
  • patch-status-calc
  • patch-status-update
  • patch-update
  • patch-update-visibility
  • patch-upload-jobs
  • pin-docker-base-image-version
  • progress_as_fraction
  • quick_fix_tw_status
  • rank_model_version_from_get_trending
  • reduce-action-duplication
  • refaactor-get-analyses-in-ls-cmd
  • refactor-analyses
  • refactor-analyses-filtering
  • refactor-api-layer
  • refactor-data_analysis-and-pipeline-to-workflow
  • refactor-endpoints
  • refactor-fastq-workflow
  • refactor-linters
  • refactor-sql-filter-function-names
  • refactor-to-PEP-0663
  • refactor-to-PEP-604
  • refactor-to-pep-0585
  • refactor-tower-client
  • refactor_add_comment
  • refactor_add_pending_analysis
  • refactor_add_user
  • refactor_basehandler
  • refactor_cancel_analysis
  • refactor_cancel_slurm_job
  • refactor_constants
  • refactor_date_module
  • refactor_delete_analysis
  • refactor_get_analysis
  • refactor_get_latest_analysis
  • refactor_job
  • refactor_job_in_update_slurm_jobs
  • refactor_mark_analyses_deleted
  • refactor_query_slurm
  • refactor_query_tower
  • refactor_query_tower_2
  • refactor_reading_squeue_output
  • refactor_set_analysis_status
  • refactor_set_analysis_uploaded
  • refactor_sql_aggregate_failed
  • refactor_sql_analysis
  • refactor_sql_archive_user
  • refactor_sql_info
  • refactor_sql_user
  • refactor_sql_users
  • refactor_update_analysis_from_slurm_output
  • refactor_update_jobs
  • refactor_update_ongoing_analyses
  • refactor_update_run_status
  • refactor_update_tower_run_status
  • refresh-token
  • remove-action
  • remove-alchy
  • remove-avatar
  • remove-balsamic-qc
  • remove-is_deleted
  • remove-pylint-config
  • remove-unused-code
  • remove-unused-endpoints
  • remove-unused-job-param
  • remove-unused-query-analyses
  • remove-unused-reformat-logic
  • remove-user-from-response
  • remove_empty_fixture_call
  • remove_get_latest_analysis_status
  • remove_is_latest_analysis_completed
  • remove_is_latest_analysis_failed
  • remove_is_latest_analysis_ongoing
  • remove_python-dateutil
  • remove_test_fixture_prefix
  • removes-mip
  • rename-family-to-case
  • rename-sars-cov-2-to-mutant
  • report-delivered-correctly
  • return-delivery-data
  • return-most-recent-failed-job
  • reverse-8-1-1
  • revert
  • revert-132-reverse-8-1-1
  • revert-507-add-token-verification
  • revert-510-add-token-verification
  • revert-68-mip-rd-rna
  • revert-latest-failed
  • revert-old
  • revert-refactoring
  • rework-delivered-counting
  • rewriting_trending_from_mip6_into_mip5
  • rm-conda-env-and-use-container
  • rm_docutils
  • rm_get_elapsed_time
  • rm_mip_start
  • rm_models_import
  • rm_pytest_yield
  • rm_sql_jobs_function
  • rm_trailblazer_check
  • rm_travis
  • rm_universal_config_option
  • rna-analysis-in-hk
  • rnafusion_support
  • scan-containers
  • set-analysis-to-fail
  • set-upload-date-fastq
  • set_status_cli
  • show-failed-last-month
  • speed-up-analyses-endpoint
  • speedup-retrieval-of-analyses
  • speedup-retrieving-latest-failed-job
  • store-multiqc
  • str-vcf
  • support-slurm-cli-or-api
  • tag-image-with-version
  • test-fix
  • test-rest-api
  • test_scope
  • test_server
  • test_server_2
  • test_server_3
  • test_server_4
  • testing-tb-on-k
  • travis-3.7
  • tw_commplete_as_qc
  • udate-werkzug
  • unfreeze_pytest
  • uodate-python
  • update-PR-template
  • update-black
  • update-black-and-ruff
  • update-bootstrap
  • update-certs
  • update-cli-image
  • update-code-owners
  • update-dependencies
  • update-deploy-instructions
  • update-jinja-2
  • update-jinja2
  • update-jquery
  • update-linters
  • update-order-status
  • update-readme
  • update-slurm-upload-jobs
  • update-upload-jobs
  • update-vue-app-packages
  • update_actions
  • update_black
  • update_code_owners
  • update_codeowners
  • update_deps
  • update_docker_actions
  • update_name_for_mip6flag
  • update_name_for_mip6flag_again
  • update_pydantic
  • update_python
  • update_pythonn
  • update_readme
  • update_ruff
  • updates-bootstrap
  • upgrade-deploy-instructions
  • upgrade-python
  • upgrade-sqlalchemy
  • upgrades-bootstrap-to-4.3.x
  • uploaded-at-column
  • usalt
  • use-abbrev
  • use-id-token
  • use-latest-analysis
  • use-poetry
  • use-sacct
  • user-endpoints

18 Dec 2025 12:35PM UTC coverage: 0.0% (-87.7%) from 87.746%
20337151192

push

github

web-flow
Accept empty string as config_path for slurm analyses (#524)

## Description

Raw data analyses will add an analysis with `config_path` as an empty string and `slurm` as workflow manager. Changes made to the validation [here](https://github.com/Clinical-Genomics/trailblazer/pull/523) made it so that combination was no longer allowed. This PR relaxes the rules to allow it again.

0 of 0 relevant lines covered (NaN%)

0.0 hits per line

Relevant lines Covered
Build:
Build:
0 RELEVANT LINES 0 COVERED LINES
0.0 HITS PER LINE
Source Files on master
  • Tree
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
20337151192 master Accept empty string as config_path for slurm analyses (#524) ## Description Raw data analyses will add an analysis with `config_path` as an empty string and `slurm` as workflow manager. Changes made to the validation [here](https://github.com/Cl... push 18 Dec 2025 12:36PM UTC web-flow github
0.0
20336974331 accept_empty_string_as_config_path Accept empty string as config_path for slurm analyses Pull #524 18 Dec 2025 12:29PM UTC mogmi github
0.0
20237019422 master Make analysis config_path optional (#523) ## Description The `config_path` of an Analysis is only used when the workflow manager is Slurm and no such file is longer being created for most Nextflow pipelines, therefore it should not be required f... push 15 Dec 2025 03:08PM UTC web-flow github
87.75
20236539063 make_config_path_optional Remove config_path from one test to cover the case where the key is missing Pull #523 15 Dec 2025 02:53PM UTC mogmi github
87.75
20161051927 make_config_path_optional Update tests/store/crud/test_create.py Co-authored-by: Alfred Kedhammar <89784800+kedhammar@users.noreply.github.com> Pull #523 12 Dec 2025 08:36AM UTC web-flow github
87.75
20033622810 make_config_path_optional Test that adding a pending analysis persists it Pull #523 08 Dec 2025 03:37PM UTC mogmi github
87.75
20033171121 make_config_path_optional Set config_path to nullable on Analysis model Pull #523 08 Dec 2025 03:22PM UTC mogmi github
87.75
19858451214 make_config_path_optional Refactor tests Pull #523 02 Dec 2025 12:24PM UTC mogmi github
87.75
19856123285 make_config_path_optional Validate that config path is set when slurm is workflow manager Pull #523 02 Dec 2025 10:55AM UTC mogmi github
87.75
19828937900 make_config_path_optional Make analysis config_path optional Pull #523 01 Dec 2025 04:00PM UTC mogmi github
87.71
See All Builds (2373)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2025 Coveralls, Inc