• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

Clinical-Genomics / trailblazer
88%

Build:
DEFAULT BRANCH: master
Repo Added 14 Mar 2018 08:15AM UTC
Files 114
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH master
branch: SELECT
CHANGE BRANCH
x
  • No branch selected
  • 2.1.2
  • 2.2.0
  • 2.2.0b
  • 2.2.1-beta
  • 3.0.0
  • 3.1.0
  • 3.1.1
  • 3.1.2
  • 3.1.4
  • 3.1.5
  • 3.1.6
  • 3.1.7
  • 3.2.0
  • 3.2.1
  • 3.2.2
  • 3.2.3
  • 3.2.4
  • 315-fix-analysis-status
  • 342-fix-search-bug
  • 4.0.0
  • 4.0.1
  • 4.1.0
  • 4.2.0
  • 4.3.0
  • 4.3.1
  • 4.3.2
  • 4.3.3
  • 5.0.0
  • 6.0.0
  • 6.0.3
  • 6.1.0
  • 6.1.1
  • 6.3.0
  • 6.3.1
  • 6.4.0
  • 6.4.1
  • 6.4.2
  • 6.4.3
  • 6.4.4
  • 6.4.5
  • 6.5.0
  • 6.6.0
  • 6.7.0
  • 6.7.1
  • 6.7.2
  • 6.8.0
  • 6.8.1
  • 6.8.2
  • 6.8.3
  • 6.8.4
  • 74-support-filtering-on-delivered
  • CGH_files
  • CI/add-jobs
  • MIP7.1-dev
  • Readd-nuxt-app
  • Remove-nuxt-application
  • Revert-nuxt
  • Solve-issue-nuxt
  • abstract-away-slurm-cli
  • accept-on-behalf-header
  • accept-workflow-id
  • add-analysis-in-cancel
  • add-cancellable-bool-to-response
  • add-delivery-table
  • add-endpoint-error-handling
  • add-filter-on-status
  • add-git-lint
  • add-integration-tests
  • add-is-hidden-parameter
  • add-keycloak
  • add-missing-indices
  • add-missing-init-file
  • add-oauth-client
  • add-order-analysis-creation
  • add-order-to-analyses
  • add-patch-endpoint
  • add-slurm-api
  • add-slurm-api-service
  • add-slurm-cli-service
  • add-slurm-client
  • add-slurm-services
  • add-summary-endpoint
  • add-ticket-number-to-analysis
  • add-to-comment
  • add-token-verification
  • add-total-count
  • add-tower-id-to-analysis
  • add-tower-missing-file-handling
  • add-typed-mock
  • add-upload-jobs
  • add-user-abbreviations
  • add-user-signatures
  • add-user-verification
  • add-visible-query-param
  • add/express-qos
  • add_alembic
  • add_config_model
  • add_docker
  • add_fail_to_temp_status
  • add_flag
  • add_io_json
  • add_isort
  • add_pre_commit
  • add_qos_maintenance
  • add_ruff
  • add_wts_as_data_analysis
  • adjust-redirect
  • attempt-certs
  • befriend-balsamic
  • beta
  • cancel-analysis
  • cancel-tower-analysis-with-stored-workflow-id
  • cancel_tower
  • cancel_tower_workflow
  • case_id_again
  • centralize-tower-setup
  • cgvs-move
  • click-freeze
  • commit-before-response
  • continues-when-mip-data-is-missing
  • dependabot/npm_and_yarn/nuxt/elliptic-6.5.3
  • dependabot/npm_and_yarn/nuxt/eslint-4.18.2
  • dependabot/npm_and_yarn/nuxt/jquery-3.4.0
  • dependabot/npm_and_yarn/nuxt/jquery-3.5.0
  • dependabot/npm_and_yarn/nuxt/jquery-3.5.1
  • dependabot/npm_and_yarn/nuxt/lodash-4.17.15
  • dependabot/npm_and_yarn/nuxt/lodash-4.17.19
  • dependabot/npm_and_yarn/nuxt/lodash.template-4.5.0
  • dependabot/npm_and_yarn/nuxt/node-fetch-2.6.1
  • dependabot/pip/jinja2-3.1.5
  • dependabot/pip/werkzeug-3.0.6
  • deployment-sop
  • depr_test
  • develop
  • dockerize-cli
  • ensure-upload-jobs-are-not-overwritten
  • extract-slurm-client-error-handling
  • feat/api-queries
  • feat/better-job-names
  • feat/cancel-by-name
  • feat/deploy_to_pypi
  • feat/detach-tb-3
  • feat/dockerize
  • feat/failtext-in-column
  • feat/get-analyses-by-comment
  • feat/integrate-balsamic-tb
  • feat/query-by-comment
  • feat/remove-comment
  • feat/remove-confighandler
  • feat_add_mipflag
  • filter-rsync-analyses
  • filter-type-of-analyses
  • fix-add-pendibg
  • fix-alembic-migration
  • fix-balsamic-filter
  • fix-balsamic-filtering
  • fix-batch-handling
  • fix-broken-dependencies
  • fix-cancel
  • fix-cancel-response
  • fix-cancelled-bug
  • fix-circular-import
  • fix-cli-images
  • fix-comment
  • fix-delete-comment
  • fix-delivered
  • fix-enum-spelling
  • fix-image-vulnerabilities
  • fix-install-workflow
  • fix-job-id-parsing
  • fix-job-serialization
  • fix-jobs-missing-in-response
  • fix-latest-analysis
  • fix-logging
  • fix-marshmallow-validation
  • fix-microsalt
  • fix-microsalt-bug
  • fix-missing-cancellable-field
  • fix-missing-ticket
  • fix-missing-type
  • fix-naming
  • fix-pydantic-warning
  • fix-pypi
  • fix-refresh-token
  • fix-ruff
  • fix-scaling
  • fix-scan-action
  • fix-slurm-api-interaction
  • fix-slurm-client
  • fix-slurm-job-info
  • fix-slurm-model
  • fix-smells
  • fix-tower-bug
  • fix-tower-response-after-update
  • fix-tower-status-bug
  • fix-types
  • fix-unknown-interpretation
  • fix-upload-job-update
  • fix/cg-clean-mipauto-mip-backwards-compat
  • fix/decouple-trailblazer-google
  • fix/force-delete
  • fix/googleuser-change
  • fix/namespace
  • fix/parse_configs_ambiguously
  • fix/remove-em-as-codeowner
  • fix/remove-pytest-from-prod-deps
  • fix/set-analysis-completed-comment
  • fix_analysis_failed_jobs
  • fix_analysis_failed_jobs_api
  • fix_delete_analysis
  • fix_long_timestamps
  • fix_looponfailroots
  • fix_server
  • fix_status_null
  • fix_time_elapsed
  • fix_time_tower
  • fix_tower_timestamp_conversion
  • fix_wrong_tb_status
  • fix_yaml
  • fix_zerodivision
  • fixes-more-obsolete-dependencies
  • fixes-obsolete-dependencies
  • force-cleaning-and-deletion
  • get_analysis
  • github_actions
  • github_actions_2
  • github_actions_3
  • gustav_test_branch
  • handle-failed-login
  • improve-env-name
  • improve-logging-for-failing-scan
  • improve-patch
  • include-case-ids-in-summary
  • include-hidden-when-searching
  • include-order-id-in-analysis-response
  • include-upload-jobs-in-analysis-response
  • make-abbreviation-non-nullable
  • make-delivered-fields-nullable
  • make_config_path_optional
  • master
  • migtate_add_user_to_createhandler
  • mip-dna-v8.0
  • mip-dna-v8.2
  • mip-pedigree
  • mip-rd-rna
  • mip6
  • mip7-command
  • mip_family_id_compatibility
  • mip_files
  • mip_parse_sampleinfo
  • missing-qccollect
  • modify_travis
  • move-rsync-filtering
  • move_start_of_mip_to_cg
  • mvp-balsamic
  • parse_qcmetrics
  • patch-analysis-endpoint
  • patch-pending-tower-analyses
  • patch-scan
  • patch-search
  • patch-status-calc
  • patch-status-update
  • patch-update
  • patch-update-visibility
  • patch-upload-jobs
  • pin-docker-base-image-version
  • progress_as_fraction
  • quick_fix_tw_status
  • rank_model_version_from_get_trending
  • reduce-action-duplication
  • refaactor-get-analyses-in-ls-cmd
  • refactor-analyses
  • refactor-analyses-filtering
  • refactor-api-layer
  • refactor-data_analysis-and-pipeline-to-workflow
  • refactor-endpoints
  • refactor-fastq-workflow
  • refactor-linters
  • refactor-sql-filter-function-names
  • refactor-to-PEP-0663
  • refactor-to-PEP-604
  • refactor-to-pep-0585
  • refactor-tower-client
  • refactor_add_comment
  • refactor_add_pending_analysis
  • refactor_add_user
  • refactor_basehandler
  • refactor_cancel_analysis
  • refactor_cancel_slurm_job
  • refactor_constants
  • refactor_date_module
  • refactor_delete_analysis
  • refactor_get_analysis
  • refactor_get_latest_analysis
  • refactor_job
  • refactor_job_in_update_slurm_jobs
  • refactor_mark_analyses_deleted
  • refactor_query_slurm
  • refactor_query_tower
  • refactor_query_tower_2
  • refactor_reading_squeue_output
  • refactor_set_analysis_status
  • refactor_set_analysis_uploaded
  • refactor_sql_aggregate_failed
  • refactor_sql_analysis
  • refactor_sql_archive_user
  • refactor_sql_info
  • refactor_sql_user
  • refactor_sql_users
  • refactor_update_analysis_from_slurm_output
  • refactor_update_jobs
  • refactor_update_ongoing_analyses
  • refactor_update_run_status
  • refactor_update_tower_run_status
  • refresh-token
  • remove-action
  • remove-alchy
  • remove-avatar
  • remove-balsamic-qc
  • remove-is_deleted
  • remove-pylint-config
  • remove-unused-code
  • remove-unused-endpoints
  • remove-unused-job-param
  • remove-unused-query-analyses
  • remove-unused-reformat-logic
  • remove-user-from-response
  • remove_empty_fixture_call
  • remove_get_latest_analysis_status
  • remove_is_latest_analysis_completed
  • remove_is_latest_analysis_failed
  • remove_is_latest_analysis_ongoing
  • remove_python-dateutil
  • remove_test_fixture_prefix
  • removes-mip
  • rename-family-to-case
  • rename-sars-cov-2-to-mutant
  • report-delivered-correctly
  • return-delivery-data
  • return-most-recent-failed-job
  • reverse-8-1-1
  • revert
  • revert-132-reverse-8-1-1
  • revert-507-add-token-verification
  • revert-510-add-token-verification
  • revert-68-mip-rd-rna
  • revert-latest-failed
  • revert-old
  • revert-refactoring
  • rework-delivered-counting
  • rewriting_trending_from_mip6_into_mip5
  • rm-conda-env-and-use-container
  • rm_docutils
  • rm_get_elapsed_time
  • rm_mip_start
  • rm_models_import
  • rm_pytest_yield
  • rm_sql_jobs_function
  • rm_trailblazer_check
  • rm_travis
  • rm_universal_config_option
  • rna-analysis-in-hk
  • rnafusion_support
  • scan-containers
  • set-analysis-to-fail
  • set-upload-date-fastq
  • set_status_cli
  • show-failed-last-month
  • speed-up-analyses-endpoint
  • speedup-retrieval-of-analyses
  • speedup-retrieving-latest-failed-job
  • store-multiqc
  • str-vcf
  • support-slurm-cli-or-api
  • tag-image-with-version
  • test-before-request
  • test-fix
  • test-rest-api
  • test_scope
  • test_server
  • test_server_2
  • test_server_3
  • test_server_4
  • testing-tb-on-k
  • travis-3.7
  • tw_commplete_as_qc
  • udate-werkzug
  • unfreeze_pytest
  • uodate-python
  • update-PR-template
  • update-black
  • update-black-and-ruff
  • update-bootstrap
  • update-certs
  • update-cli-image
  • update-code-owners
  • update-dependencies
  • update-deploy-instructions
  • update-jinja-2
  • update-jinja2
  • update-jquery
  • update-linters
  • update-order-status
  • update-readme
  • update-slurm-upload-jobs
  • update-upload-jobs
  • update-vue-app-packages
  • update_actions
  • update_black
  • update_code_owners
  • update_codeowners
  • update_deps
  • update_docker_actions
  • update_name_for_mip6flag
  • update_name_for_mip6flag_again
  • update_pydantic
  • update_python
  • update_pythonn
  • update_readme
  • update_ruff
  • updates-bootstrap
  • upgrade-deploy-instructions
  • upgrade-python
  • upgrade-sqlalchemy
  • upgrades-bootstrap-to-4.3.x
  • uploaded-at-column
  • usalt
  • use-abbrev
  • use-id-token
  • use-latest-analysis
  • use-poetry
  • use-sacct
  • user-endpoints

06 May 2026 11:26AM UTC coverage: 87.803%. Remained the same
25432460426

push

github

web-flow
Add typed mock module (#532) (patch)

### Added

- Typed mock module

2102 of 2394 relevant lines covered (87.8%)

0.88 hits per line

Relevant lines Covered
Build:
Build:
2394 RELEVANT LINES 2102 COVERED LINES
0.88 HITS PER LINE
Source Files on master
  • Tree
  • List 114
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
25432460426 master Add typed mock module (#532) (patch) ### Added - Typed mock module push 06 May 2026 11:28AM UTC web-flow github
87.8
25165084281 add-typed-mock add implementation of typed mock Pull #532 30 Apr 2026 12:23PM UTC kedhammar github
87.8
25163426678 add-typed-mock black Pull #532 30 Apr 2026 11:43AM UTC kedhammar github
87.8
25163313798 add-typed-mock add typed mock module push 30 Apr 2026 11:40AM UTC kedhammar github
87.8
23854166467 test-before-request additional scenarios Pull #529 01 Apr 2026 02:37PM UTC mogmi github
88.22
23851834189 test-before-request Merge branch 'master' into test-before-request Pull #529 01 Apr 2026 01:46PM UTC web-flow github
88.05
23851654830 test-before-request Rename endpoint so it is not collected as a test Pull #529 01 Apr 2026 01:42PM UTC mogmi github
87.89
23847949400 master accept on-behalf-of header (#527)(patch) ## Description Add support for authentication on behalf of a valid user To be merged at the same time as https://github.com/Clinical-Genomics/cg/pull/4976 ### Added - Support for authentication on behal... push 01 Apr 2026 12:13PM UTC web-flow github
87.8
23847543418 accept-on-behalf-header rollback some change sin tests Pull #527 01 Apr 2026 12:02PM UTC diitaz93 github
87.64
23787795332 master Fix trailblazer to commit all or none (#528) (patch) ## Description The update handler commits every time an entry is modified. For the functions regarding updating analyses, we moved the commit calls to the service layer, so that we could do a f... push 31 Mar 2026 08:26AM UTC web-flow github
87.91
See All Builds (2405)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc