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Clinical-Genomics / trailblazer
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Repo Added 14 Mar 2018 08:15AM UTC
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pending completion
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Merge pull request #24 from Clinical-Genomics/add_flag

Add flag --start_with_program for mip start

458 of 798 relevant lines covered (57.39%)

0.57 hits per line

Relevant lines Covered
Build:
Build:
798 RELEVANT LINES 458 COVERED LINES
0.57 HITS PER LINE
Source Files on mip6
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
380 mip6 Merge pull request #24 from Clinical-Genomics/add_flag Add flag --start_with_program for mip start push 18 Apr 2018 01:48PM UTC web-flow travis-ci pending completion  
379 mip6 Changed flag after comments from pull request Pull #24 18 Apr 2018 08:11AM UTC web-flow travis-ci pending completion  
377 mip6 Added --startfrom flag Pull #24 17 Apr 2018 10:46AM UTC web-flow travis-ci pending completion  
368 mip6 Update .bumpversion.cfg push 04 Apr 2018 10:53AM UTC web-flow travis-ci pending completion  
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