Clinical-Genomics / trailblazer

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• update-code-owners
• mip6
• master
• 2.1.2
• add_flag
• update_name_for_mip6flag
• rewriting_trending_from_mip6_into_mip5
• 2.2.0
• update_name_for_mip6flag_again
• beta
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• feat_add_mipflag
• 2.2.0b
• 2.2.1-beta
• rank_model_version_from_get_trending
• 3.0.0
• 3.1.0
• 3.1.2
• 3.1.1
• update-bootstrap
• click-freeze
• usalt
• CGH_files
• update-readme
• add-git-lint
• continues-when-mip-data-is-missing
• updates-bootstrap
• upgrades-bootstrap-to-4.3.x
• 3.2.0
• 3.1.4
• fixes-obsolete-dependencies
• 3.1.5
• fixes-more-obsolete-dependencies
• 3.1.6
• depr_test
• befriend-balsamic
• update-jquery
• removes-mip
• 3.1.7
• fix-broken-dependencies
• mip-pedigree
• MIP7.1-dev
• str-vcf
• mip7-command
• 3.2.1
• dependabot/npm_and_yarn/nuxt/jquery-3.4.0
• dependabot/npm_and_yarn/nuxt/eslint-4.18.2
• dependabot/npm_and_yarn/nuxt/lodash-4.17.15
• dependabot/npm_and_yarn/nuxt/lodash.template-4.5.0
• 3.2.2
• 3.2.3
• 3.2.4
• travis-3.7
• 4.0.0
• mvp-balsamic
• missing-qccollect
• 4.0.1
• force-cleaning-and-deletion
• 4.1.0
• mip-rd-rna
• revert-68-mip-rd-rna
• 4.2.0
• show-failed-last-month
• 4.3.0
• store-multiqc
• rna-analysis-in-hk
• 4.3.1
• update-dependencies
• 4.3.2
• mip-dna-v8.0
• feat/cancel-by-name
• mip-dna-v8.2
• fix/googleuser-change
• 4.3.3
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• 6.0.0
• CI/add-jobs
• fix/remove-pytest-from-prod-deps
• 6.0.3
• fix/cg-clean-mipauto-mip-backwards-compat
• 6.1.0
• fix/namespace
• 6.1.1
• dependabot/npm_and_yarn/nuxt/jquery-3.5.0
• 6.3.0
• dependabot/npm_and_yarn/nuxt/jquery-3.5.1
• fix/decouple-trailblazer-google
• 6.3.1
• feat/get-analyses-by-comment
• 6.4.0
• feat/failtext-in-column
• deployment-sop
• fix-marshmallow-validation
• 6.4.1
• dependabot/npm_and_yarn/nuxt/lodash-4.17.19
• dependabot/npm_and_yarn/nuxt/elliptic-6.5.3
• mip_parse_sampleinfo
• 6.4.2
• move_start_of_mip_to_cg
• 6.4.3
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• 6.4.5
• rm_mip_start
• update-PR-template
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• add_fail_to_temp_status
• get_analysis
• 6.5.0
• update-vue-app-packages
• 6.6.0
• 6.7.0
• feat/deploy_to_pypi
• 6.7.1
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• 6.8.0
• parse_qcmetrics
• 6.8.1
• 6.8.2
• case_id_again
• 6.8.3
• handle-failed-login
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• 6.8.4
• feat/remove-confighandler
• feat/api-queries
• modify_travis
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• feat/integrate-balsamic-tb
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• feat/remove-comment
• feat/better-job-names
• feat/query-by-comment
• feat/dockerize
• fix/parse_configs_ambiguously
• fix/remove-em-as-codeowner
• user-endpoints
• cgvs-move
• attempt-certs
• fix-types
• add/express-qos
• fix-comment
• add_qos_maintenance
• fix_time_elapsed
• add-ticket-number-to-analysis
• uploaded-at-column
• fix-install-workflow
• update_actions
• update_docker_actions
• set-analysis-to-fail
• add_alembic
• rnafusion_support
• fix_zerodivision
• add_wts_as_data_analysis
• progress_as_fraction
• tw_commplete_as_qc
• update_black
• update_python
• rm_pytest_yield
• fix_looponfailroots
• fix_yaml
• rm_universal_config_option
• update_readme
• fix_time_tower
• update_deps
• add_ruff
• rm_models_import
• test_scope
• add_io_json
• update_pythonn
• refactor_sql_user
• test_server
• test_server_2
• test_server_3
• test_server_4
• pin-docker-base-image-version
• refactor_sql_info
• refactor_add_user
• refactor_sql_users
• update_code_owners
• add_pre_commit
• rm_docutils
• unfreeze_pytest
• set_status_cli
• refactor_sql_archive_user
• fix_server
• rm_sql_jobs_function
• refactor_sql_aggregate_failed
• rm_get_elapsed_time
• refactor_add_pending_analysis
• fix_status_null
• refactor_update_jobs
• refactor_sql_analysis
• quick_fix_tw_status
• refactor_reading_squeue_output
• cancel_tower_workflow
• migtate_add_user_to_createhandler
• refactor_date_module
• refactor_job_in_update_slurm_jobs
• refactor_constants
• refactor_job
• remove_python-dateutil
• fix_tower_timestamp_conversion
• add_isort
• update_pydantic
• fix_delete_analysis
• fix_analysis_failed_jobs
• add_docker
• refactor_get_analysis
• update_codeowners
• fix_wrong_tb_status
• fix_analysis_failed_jobs_api
• remove_is_latest_analysis_completed
• remove_is_latest_analysis_failed
• remove_is_latest_analysis_ongoing
• refactor_get_latest_analysis
• remove_get_latest_analysis_status
• refactor_query_slurm
• fix-latest-analysis
• refactor_mark_analyses_deleted
• add_config_model
• refactor_cancel_slurm_job
• refactor_set_analysis_status
• remove_test_fixture_prefix
• refactor_cancel_analysis
• remove_empty_fixture_call
• refactor_set_analysis_uploaded
• refactor_add_comment
• refactor_delete_analysis
• refactor_query_tower
• update_ruff
• refactor_update_analysis_from_slurm_output
• fix_long_timestamps
• cancel_tower
• refactor_update_ongoing_analyses
• refactor_query_tower_2
• gustav_test_branch
• refactor_update_run_status
• refactor_update_tower_run_status
• refaactor-get-analyses-in-ls-cmd
• remove-unused-query-analyses
• refactor-analyses
• fix-enum-spelling
• refactor_basehandler
• remove-alchy
• patch-analysis-endpoint
• upgrade-sqlalchemy
• commit-before-response
• fix-smells
• upgrade-python
• speedup-retrieval-of-analyses
• speed-up-analyses-endpoint
• refactor-to-pep-0585
• refactor-to-PEP-604
• 315-fix-analysis-status
• testing-tb-on-k
• refactor-to-PEP-0663
• patch-update-visibility
• patch-update
• return-most-recent-failed-job
• speedup-retrieving-latest-failed-job
• revert-latest-failed
• fix-scaling
• add-integration-tests
• update-black-and-ruff
• rename-family-to-case
• add-total-count
• remove-is_deleted
• include-hidden-when-searching
• fix-delete-comment
• improve-logging-for-failing-scan
• fix-logging
• 342-fix-search-bug
• refactor-api-layer
• remove-user-from-response
• scan-containers
• remove-unused-endpoints
• fix-image-vulnerabilities
• fix-jobs-missing-in-response
• fix-ruff
• fix-scan-action
• remove-action
• add-slurm-client
• rename-sars-cov-2-to-mutant
• support-slurm-cli-or-api
• revert
• add-slurm-services
• fix-slurm-model
• fix-slurm-job-info
• add-slurm-cli-service
• add-upload-jobs
• remove-unused-job-param
• update-slurm-upload-jobs
• update-black
• remove-avatar
• remove-pylint-config
• include-upload-jobs-in-analysis-response
• fix-alembic-migration
• fix-upload-job-update
• update-upload-jobs
• test-rest-api
• fix-slurm-client
• add-missing-init-file
• ensure-upload-jobs-are-not-overwritten
• refactor-endpoints
• fix-circular-import
• add-order-to-analyses
• add-filter-on-status
• add-order-analysis-creation
• fix-add-pendibg
• fix-missing-ticket
• fix-missing-type
• refactor-data_analysis-and-pipeline-to-workflow
• fix-job-serialization
• fix-balsamic-filtering
• patch-scan
• add-patch-endpoint
• add-summary-endpoint
• improve-patch
• refactor-sql-filter-function-names
• add-oauth-client
• fix-balsamic-filter
• refresh-token
• fix-naming
• improve-env-name
• adjust-redirect
• add-delivery-table
• use-id-token
• fix-refresh-token
• return-delivery-data
• 74-support-filtering-on-delivered
• refactor-analyses-filtering
• patch-search
• fix-delivered
• use-latest-analysis
• make-delivered-fields-nullable
• filter-rsync-analyses
• abstract-away-slurm-cli
• report-delivered-correctly
• move-rsync-filtering
• rework-delivered-counting
• update-order-status
• dockerize-cli
• revert-old
• fix-job-id-parsing
• add-slurm-api-service
• upgrade-deploy-instructions
• patch-upload-jobs
• fix-tower-status-bug
• fix-tower-bug
• fix-cancelled-bug
• fix-microsalt-bug
• fix-microsalt
• tag-image-with-version
• reduce-action-duplication
• fix-cli-images
• test-fix
• update-deploy-instructions
• add-to-comment
• update-cli-image
• add-slurm-api
• fix-slurm-api-interaction
• include-case-ids-in-summary
• add-user-abbreviations
• centralize-tower-setup
• add-user-signatures
• make-abbreviation-non-nullable
• use-abbrev
• set-upload-date-fastq
• add-visible-query-param
• filter-type-of-analyses
• refactor-tower-client
• update-linters
• remove-unused-reformat-logic
• include-order-id-in-analysis-response
• add-endpoint-error-handling
• cancel-analysis
• fix-cancel-response
• revert-refactoring
• patch-status-calc
• add-analysis-in-cancel
• extract-slurm-client-error-handling
• add-tower-missing-file-handling
• patch-status-update
• add-tower-id-to-analysis
• accept-workflow-id
• cancel-tower-analysis-with-stored-workflow-id
• add-cancellable-bool-to-response
• fix-missing-cancellable-field
• remove-unused-code
• fix-cancel
• add-is-hidden-parameter
• use-poetry
• refactor-fastq-workflow
• fix-pypi
• rm-conda-env-and-use-container
• uodate-python
• fix-pydantic-warning
• dependabot/pip/werkzeug-3.0.6
• udate-werkzug
• refactor-linters

Merge 525003b18 into a921d797d