broadinstitute / viral-ngs / 1231

Builds Branch Commit Type Ran Committer Via Coverage
1231 ct-krakenuniq-summary-kmer-filter Merge 016ff032e into e144969e4 Pull #998 web-flow travis-ci-com pending completion   set done
1230 ct-krakenuniq-summary-kmer-filter Merge branch 'master' into ct-krakenuniq-summary-kmer-filter push web-flow travis-ci-com pending completion   set done
1229 ct-add-flowcell-types Merge branch 'master' into ct-add-flowcell-types Pull #1000 web-flow travis-ci-com pending completion   set done
1228 ct-add-flowcell-types Merge branch 'master' into ct-add-flowcell-types push web-flow travis-ci-com pending completion   set done
1227 ct-single-end-bwa-deplete Merge branch 'master' into ct-single-end-bwa-deplete Pull #1008 web-flow travis-ci-com pending completion   set done
1226 ct-single-end-bwa-deplete Merge branch 'master' into ct-single-end-bwa-deplete push web-flow travis-ci-com pending completion   set done
1225 ct-single-end-bwa-deplete Update read_utils.py The old mvicuna post-processing code expects read IDs to have a /1 mate suffix, and only includes those that do, which single-end reads do not have (nor interleaved fastqs, but that's a separate issue and we're generating the... Pull #1008 web-flow travis-ci-com pending completion   set done
1224 ct-single-end-bwa-deplete Update read_utils.py The old mvicuna post-processing code expects read IDs to have a /1 mate suffix, and only includes those that do, which single-end reads do not have (nor interleaved fastqs, but that's a separate issue and we're generating the... push tomkinsc travis-ci-com pending completion   set done
1223 ct-add-clumpify Merge branch 'master' into ct-add-clumpify Pull #970 web-flow travis-ci-com pending completion   set done
1222 ct-add-clumpify Merge branch 'master' into ct-add-clumpify push web-flow travis-ci-com pending completion   set done
1221 master ensure read_structure override works for CheckIlluminaDirectory (#1007) ensure read_structure override works for CheckIlluminaDirectory during demux; error out if check fails push web-flow travis-ci-com pending completion   set done
1220 ct-add-clumpify pass through single-end IDs for bbmap dedup single-end reads do not have /1 /2 mate suffix, so pass through IDs missing the suffix Pull #970 web-flow travis-ci-com pending completion   set done
1219 ct-add-clumpify pass through single-end IDs for bbmap dedup single-end reads do not have /1 /2 mate suffix, so pass through IDs missing the suffix push tomkinsc travis-ci-com pending completion   set done
1218 ct-fix-demux-checkdir ensure read_structure override works for CheckIlluminaDirectory ensure read_structure override works for CheckIlluminaDirectory during demux; error out if check fails Pull #1007 web-flow travis-ci-com pending completion   set done
1217 ct-fix-demux-checkdir ensure read_structure override works for CheckIlluminaDirectory ensure read_structure override works for CheckIlluminaDirectory during demux; error out if check fails push tomkinsc travis-ci-com pending completion   set done