broadinstitute / viral-ngs / 1075

Builds Branch Commit Type Ran Committer Via Coverage
1075 ct-add-clumpify update expected depletion output now that we're not running dedup on it Pull #970 web-flow travis-ci-com pending completion   set done
1074 ct-add-clumpify update expected depletion output now that we're not running dedup on it push tomkinsc travis-ci-com pending completion   set done
1072 ct-add-clumpify remove rmdup from depletion call remove rmdup from depletion call, remove *.rmdup.bam from positional arguments for depletion CLI parser, remove *.rmdup.bam from inputs where depletion is called (test cases, WDL), remove *.rmdup.bam from expected... push tomkinsc travis-ci-com pending completion   set done
1073 ct-add-clumpify remove rmdup from depletion call remove rmdup from depletion call, remove *.rmdup.bam from positional arguments for depletion CLI parser, remove *.rmdup.bam from inputs where depletion is called (test cases, WDL), remove *.rmdup.bam from expected... Pull #970 web-flow travis-ci-com pending completion   set done
1071 ct-add-clumpify --JVMmemory=1g for TestDepleteHuman Pull #970 web-flow travis-ci-com pending completion   set done
1070 ct-add-clumpify --JVMmemory=1g for TestDepleteHuman push tomkinsc travis-ci-com pending completion   set done
1068 ct-add-clumpify change to clumpify for pre-depletion dedup change to clumpify for pre-depletion dedup; dedup lication can be likely be removed from depletion entirely in the future once all calls in the codebase have been updated to have one fewer arg Pull #970 web-flow travis-ci-com pending completion   set done
1069 ct-add-clumpify change to clumpify for pre-depletion dedup change to clumpify for pre-depletion dedup; dedup lication can be likely be removed from depletion entirely in the future once all calls in the codebase have been updated to have one fewer arg push tomkinsc travis-ci-com pending completion   set done
1066 ct-add-clumpify switch to clumpify for downsample dedup push tomkinsc travis-ci-com pending completion   set done
1067 ct-add-clumpify switch to clumpify for downsample dedup Pull #970 web-flow travis-ci-com pending completion   set done
1065 ct-add-clumpify WDL dedup_bam: report read count before & after dedup Pull #970 web-flow travis-ci-com pending completion   set done
1064 ct-add-clumpify WDL dedup_bam: report read count before & after dedup push tomkinsc travis-ci-com pending completion   set done
1063 ct-add-clumpify respecify kaiju deps Pull #970 web-flow travis-ci-com pending completion   set done
1062 ct-add-clumpify respecify kaiju deps push tomkinsc travis-ci-com pending completion   set done
1061 ct-add-clumpify move krakenuniq back outside scatter Pull #970 web-flow travis-ci-com pending completion   set done