broadinstitute / viral-ngs / 1178

Builds Branch Commit Type Ran Committer Via Coverage
1178 is-add-assembly-optimality-reports add tests for specifying stages to compare to push notestaff travis-ci-com pending completion   set done
1177 is-add-asm-improvability-metrics-b/wip-generic-asm-stage-reports added tests for assembly optimality report push notestaff travis-ci-com pending completion   set done
1176 master Update read_utils.py (#1005) allow `do_not_sanitize` arg to be passed to revert_bam_picard entrypoint push web-flow travis-ci-com pending completion   set done
1175 is-add-asm-improvability-metrics Merge remote-tracking branch 'origin/master' into is-add-asm-improvability-metrics push notestaff travis-ci-com pending completion   set done
1174 ct-revert-bam-bugfix Merge branch 'master' into ct-revert-bam-bugfix Pull #1005 web-flow travis-ci-com pending completion   set done
1173 ct-revert-bam-bugfix Merge branch 'master' into ct-revert-bam-bugfix push web-flow travis-ci-com pending completion   set done
1172 master update source url for obtaining gatk 3.8 (#1003) DSP has updated the GATK website, breaking links to older versions. Tarballs for the older versions are preserved on GS with public links: https://console.cloud.google.com/storage/browser/gatk-soft... push web-flow travis-ci-com pending completion   set done
1171 is-add-asm-improvability-metrics improv_metrics: fixed read_map that should be read_json push notestaff travis-ci-com pending completion   set done
1170 is-add-asm-improvability-metrics fixed typo in improv_reports push notestaff travis-ci-com pending completion   set done
1169 is-add-asm-improvability-metrics fixes for improv_report push notestaff travis-ci-com pending completion   set done
1168 is-add-asm-improvability-metrics fix typo in improv_report push notestaff travis-ci-com pending completion   set done
1166 is-add-asm-improvability-metrics fix improv_report push notestaff travis-ci-com pending completion   set done
1165 is-add-asm-improvability-metrics fixed bugs in assembly improvability report pipeline push notestaff travis-ci-com pending completion   set done
1164 is-add-asm-improvability-metrics pipes/WDL/workflows: added stand-alone workflow for improv_metrics push notestaff travis-ci-com pending completion   set done
1159 is-add-asm-improvability-metrics changed assemble_denovo to have lastal_db_fasta as a workflow-level argument push notestaff travis-ci-com pending completion   set done