broadinstitute / viral-ngs / 1221
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DEFAULT BRANCH: master
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Jobs 2
Files 43
Run time 4min
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ensure read_structure override works for CheckIlluminaDirectory (#1007)

ensure read_structure override works for CheckIlluminaDirectory during demux; error out if check fails

293 of 2691 branches covered (10.89%)

1 of 1 new or added line in 1 file covered. (100.0%)

1452 of 6242 relevant lines covered (23.26%)

0.92 hits per line

Jobs
ID Job ID Ran Files Coverage
4 1221.4 (CACHE_DIR="$HOME/misc_cache" MINICONDA_DIR="$HOME/miniconda" PIP_DIR="$HOME/virtualenv" GATK_PATH="$CACHE_DIR" PYTHONIOENCODING=UTF8 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov kmer_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils" DOCKER_REGISTRY="quay.io" DOCKER_REPO_PROD="quay.io/broadinstitute/viral-ngs" DOCKER_REPO_DEV="quay.io/broadinstitute/viral-ngs-dev" DOCKER_REGISTRY_MIRROR="docker.io" DOCKER_REPO_PROD_MIRROR="broadinstitute/viral-ngs" BOTO_CONFIG=/dev/null _JAVA_OPTIONS="-Xmx3g" TRAVIS_JOB=test_py36) 0
72.99
 Travis Job 1221.4
5 1221.5 (CACHE_DIR="$HOME/misc_cache" MINICONDA_DIR="$HOME/miniconda" PIP_DIR="$HOME/virtualenv" GATK_PATH="$CACHE_DIR" PYTHONIOENCODING=UTF8 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov kmer_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils" DOCKER_REGISTRY="quay.io" DOCKER_REPO_PROD="quay.io/broadinstitute/viral-ngs" DOCKER_REPO_DEV="quay.io/broadinstitute/viral-ngs-dev" DOCKER_REGISTRY_MIRROR="docker.io" DOCKER_REPO_PROD_MIRROR="broadinstitute/viral-ngs" BOTO_CONFIG=/dev/null _JAVA_OPTIONS="-Xmx3g" TRAVIS_JOB=test_snakemake) 0
23.26
 Travis Job 1221.5
Source Files on build 1221
Detailed source file information is not available for this build.