broadinstitute / viral-ngs / 1131

Builds Branch Commit Type Ran Committer Via Coverage
1131 ct-1.25.0_kraken_hotfix restore kraken cli commands to metagenomics.py push tomkinsc travis-ci-com pending completion   set done
1128 ct-krakenuniq-summary-kmer-filter regex raw string push tomkinsc travis-ci-com pending completion   set done
1129 ct-krakenuniq-summary-kmer-filter regex raw string Pull #998 web-flow travis-ci-com pending completion   set done
1127 ct-1.25.0_kraken_hotfix switch from krakenuniq to kraken for demux_plus; add classify_kraken switch from krakenuniq to kraken for demux_plus; add classify_kraken; change default inputs push tomkinsc travis-ci-com pending completion   set done
1126 ct-1.25.0_kraken_hotfix specify separate conda env for kraken from @dpark01: w/r/t kraken and krakenuniq: "They both refer to an internal script called set_lca but they both have slightly different versions of that script that are not cli compatible with each other and ... push tomkinsc travis-ci-com pending completion   set done
1125 ct-1.25.0_kraken_hotfix jinja2 case push tomkinsc travis-ci-com pending completion   set done
1118 ct-krakenuniq-summary-kmer-filter Merge branch 'master' into ct-krakenuniq-summary-kmer-filter push web-flow travis-ci-com pending completion   set done
1119 ct-krakenuniq-summary-kmer-filter Merge branch 'master' into ct-krakenuniq-summary-kmer-filter Pull #998 web-flow travis-ci-com pending completion   set done
1109 master jinja2 case push tomkinsc travis-ci-com pending completion   set done
1106 ct-krakenuniq-summary-kmer-filter extend assertApproxEqualValuesInDelimitedFiles extend assertApproxEqualValuesInDelimitedFiles() test to use dicts in the case where a header line of field names is available so value comparisons can be made independent of column order. This is on... Pull #998 web-flow travis-ci-com pending completion   set done
1105 ct-krakenuniq-summary-kmer-filter extend assertApproxEqualValuesInDelimitedFiles extend assertApproxEqualValuesInDelimitedFiles() test to use dicts in the case where a header line of field names is available so value comparisons can be made independent of column order. This is on... push tomkinsc travis-ci-com pending completion   set done
1098 ct-krakenuniq-summary-kmer-filter add test TestKrakenUniqSummaryFilter::test_leaves_trimmed push tomkinsc travis-ci-com pending completion   set done
1099 ct-krakenuniq-summary-kmer-filter add test TestKrakenUniqSummaryFilter::test_leaves_trimmed Pull #998 web-flow travis-ci-com pending completion   set done
1096 ct-krakenuniq-summary-kmer-filter add test class TestKrakenUniqSummaryFilter add test class TestKrakenUniqSummaryFilter, with first test case: test_unchanged_report push tomkinsc travis-ci-com pending completion   set done
1097 ct-krakenuniq-summary-kmer-filter add test class TestKrakenUniqSummaryFilter add test class TestKrakenUniqSummaryFilter, with first test case: test_unchanged_report Pull #998 web-flow travis-ci-com pending completion   set done