broadinstitute / viral-ngs / 1223
23%
master: 23%

LAST BUILD BRANCH: ct-krakenuniq-summary-kmer-filter
DEFAULT BRANCH: master
Ran
Jobs 2
Files 43
Run time 4min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
1223

Pull #970

travis-ci-com

web-flow 
Merge branch 'master' into ct-add-clumpify
Pull Request #970: add clumpify-based dedup

293 of 2725 branches covered (10.75%)

105 of 105 new or added lines in 4 files covered. (100.0%)

1452 of 6311 relevant lines covered (23.01%)

0.92 hits per line

Jobs
ID Job ID Ran Files Coverage
4 1223.4 (CACHE_DIR="$HOME/misc_cache" MINICONDA_DIR="$HOME/miniconda" PIP_DIR="$HOME/virtualenv" GATK_PATH="$CACHE_DIR" PYTHONIOENCODING=UTF8 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov kmer_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils" DOCKER_REGISTRY="quay.io" DOCKER_REPO_PROD="quay.io/broadinstitute/viral-ngs" DOCKER_REPO_DEV="quay.io/broadinstitute/viral-ngs-dev" DOCKER_REGISTRY_MIRROR="docker.io" DOCKER_REPO_PROD_MIRROR="broadinstitute/viral-ngs" BOTO_CONFIG=/dev/null _JAVA_OPTIONS="-Xmx3g" TRAVIS_JOB=test_py36) 0
73.19
 Travis Job 1223.4
5 1223.5 (CACHE_DIR="$HOME/misc_cache" MINICONDA_DIR="$HOME/miniconda" PIP_DIR="$HOME/virtualenv" GATK_PATH="$CACHE_DIR" PYTHONIOENCODING=UTF8 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov kmer_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils" DOCKER_REGISTRY="quay.io" DOCKER_REPO_PROD="quay.io/broadinstitute/viral-ngs" DOCKER_REPO_DEV="quay.io/broadinstitute/viral-ngs-dev" DOCKER_REGISTRY_MIRROR="docker.io" DOCKER_REPO_PROD_MIRROR="broadinstitute/viral-ngs" BOTO_CONFIG=/dev/null _JAVA_OPTIONS="-Xmx3g" TRAVIS_JOB=test_snakemake) 0
23.01
 Travis Job 1223.5
Source Files on build 1223
Detailed source file information is not available for this build.