broadinstitute / viral-ngs / 1060

Builds Branch Commit Type Ran Committer Via Coverage
1060 ct-add-clumpify move krakenuniq back outside scatter push tomkinsc travis-ci-com pending completion   set done
1059 ct-add-clumpify demux_plus/demux_metag: update dx defaults and pass explicitly in workflow Pull #970 web-flow travis-ci-com pending completion   set done
1058 ct-add-clumpify demux_plus/demux_metag: update dx defaults and pass explicitly in workflow push tomkinsc travis-ci-com pending completion   set done
1057 ct-add-clumpify maintain RG info in clumpify dedup; move processing to bbmap.py for bbmap clumpify de-dup, merge like-library RGs and perform deduplication on each, then gather the IDs of kept reads, and filter the input sam based on the list of IDs to keep so a... Pull #970 web-flow travis-ci-com pending completion   set done
1056 ct-add-clumpify maintain RG info in clumpify dedup; move processing to bbmap.py for bbmap clumpify de-dup, merge like-library RGs and perform deduplication on each, then gather the IDs of kept reads, and filter the input sam based on the list of IDs to keep so a... push tomkinsc travis-ci-com pending completion   set done
1054 ct-add-clumpify fix bug in conda command quiet calling fix bug in conda command quiet calling ('-q -y' must be after 'conda <command>') push tomkinsc travis-ci-com pending completion   set done
1055 ct-add-clumpify fix bug in conda command quiet calling fix bug in conda command quiet calling ('-q -y' must be after 'conda <command>') Pull #970 web-flow travis-ci-com pending completion   set done
1052 ct-add-clumpify rmdup_clumpify_bam: preserve sortorder value of input bam push tomkinsc travis-ci-com pending completion   set done
1053 ct-add-clumpify rmdup_clumpify_bam: preserve sortorder value of input bam Pull #970 web-flow travis-ci-com pending completion   set done
1051 ct-add-clumpify add DNAnexus defaults for demux_metag, set inputs in demux_metag Pull #970 web-flow travis-ci-com pending completion   set done
1050 ct-add-clumpify add DNAnexus defaults for demux_metag, set inputs in demux_metag push tomkinsc travis-ci-com pending completion   set done
1048 ct-add-clumpify demux_plus/demux_metag: merge linear parts of scatters, run spike-in on raw rather than de-duped reads push tomkinsc travis-ci-com pending completion   set done
1049 ct-add-clumpify demux_plus/demux_metag: merge linear parts of scatters, run spike-in on raw rather than de-duped reads Pull #970 web-flow travis-ci-com pending completion   set done
1047 lk-bulk_assemble_denovo three tasks inside scatter, each with its own special name via as push lakras travis-ci-com pending completion   set done
1046 lk-bulk_assemble_denovo two tasks inside scatter, both with special names via as push lakras travis-ci-com pending completion   set done