googlegenomics / gcp-variant-transforms / 1710

Builds Branch Commit Type Ran Committer Via Coverage
1710 bq2 Address the comments. Pull #484 web-flow travis-ci pending completion   set done
1709 bq2 Improvements on BGZF - Use one block to decompress the data rather than 2 - Remove the constrains on 64 MB per chunk. - Change the merge chunk size to 1 MB to improve the speed. Test shows it now has very close and sometimes even better performanc... Pull #484 web-flow travis-ci pending completion   set done
1708 bq2 Add support for reading of bgzf. If the index file is not present, use fusion break to speed up the pipeline. Otherwise, parse the index file and read the bgzf in parallel. The BGZF can end with .gz or .bgz, and must be in GCS. The index file is r... Pull #484 web-flow travis-ci pending completion   set done
1707 bq2 Add support for reading of bgzf. If the index file is not present, use fusion break to speed up the pipeline. Otherwise, parse the index file and read the bgzf in parallel. The BGZF can end with .gz or .bgz, and must be in GCS. The index file is r... Pull #484 web-flow travis-ci pending completion   set done
1705 bq2 Add support for parallel reading of bgzf. The BGZF can end with .gz or .bgz, and must be in GCS. The index file is required to be in the same path as bgzf ending with .tbi. Only PyVCF Parser is supported. Pull #484 web-flow travis-ci pending completion   set done
1703 disk_estimator Make final fixes to PR Pull #335 web-flow travis-ci pending completion   set done
1702 auto_flags Address third iteration of comments. Pull #480 web-flow travis-ci pending completion   set done
1701 auto_flags Address third iteration of comments - NOT FINISHED. Pull #480 web-flow travis-ci pending completion   set done
1700 auto_flags Adress next iteration of comments. Pull #480 web-flow travis-ci pending completion   set done
1699 auto_flags Address review comments. Also removed optimize_flags{/_test}.py files which somehow got added back. Pull #480 web-flow travis-ci pending completion   set done
1697 master Add Mac Auto generated files to ignore list. (#483) push web-flow travis-ci pending completion   set done
1696 git_ignorer Add Mac Auto generated files to ignore list. Pull #483 web-flow travis-ci pending completion   set done
1695 auto_flags Create infrastructure to adding automatic flag selection and manipulation: - Add "Experiment" feature to flags to allow enabling/disabling certain workflows. - Add infrastructure to read, meassure and manipulate VCF files to extract 5 main sig... Pull #480 web-flow travis-ci pending completion   set done
1693 v0.7.1 Bump version to 0.7.1, that fixes issue 475. (#478) push web-flow travis-ci pending completion   set done
1692 master Bump version to 0.7.1, that fixes issue 475. (#478) push web-flow travis-ci pending completion   set done