1709
89%
master: 89%

Ran 29 May 2019 03:36PM UTC

Jobs 1

Files 107

Run time 9s

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Build # 1709

Build Type

Pull #484

travis-ci

Committed by

web-flow

Commit Message

Improvements on BGZF
- Use one block to decompress the data rather than 2
- Remove the constrains on 64 MB per chunk.
- Change the merge chunk size to 1 MB to improve the speed. Test shows
it now has very close and sometimes even better performance to uncompressed form.

Pull Request Pull Request #484: Add support for bgzf.

Run Details

298 of 298 new or added lines in 8 files covered. (100.0%)

7217 of 8296 relevant lines covered (86.99%)

0.87 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	97.67	-0.53%	gcp_variant_transforms/beam_io/vcf_header_io.py
2	74.79	4.69%	gcp_variant_transforms/pipeline_common.py
7	90.63	-3.97%	gcp_variant_transforms/beam_io/vcfio.py
10	35.53	-0.88%	gcp_variant_transforms/vcf_to_bq.py
85	51.36	-11.18%	gcp_variant_transforms/beam_io/vcf_parser.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	35.53	-0.88%	gcp_variant_transforms/vcf_to_bq.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	1709.1	29 May 2019 03:36PM UTC	107	86.99	Travis Job 1709.1

googlegenomics / gcp-variant-transforms / 1709
89%
master: 89%

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Source Files on build 1709

googlegenomics / gcp-variant-transforms / 1709 89% master: 89%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 1709

googlegenomics / gcp-variant-transforms / 1709
89%
master: 89%

README BADGES
x