googlegenomics / gcp-variant-transforms / 1745

Builds Branch Commit Type Ran Committer Via Coverage
1745 preprocessor address comments 2 Pull #490 web-flow travis-ci pending completion   set done
1744 pysam Introduce PySam as an alternative parsing library. Pull #491 web-flow travis-ci pending completion   set done
1743 schema Create a sample info table - Use flag --create_sample_info_table to create this table. - The table contains sample id and the file path. - The sample id is also added into the variant record. - Ignore sample id column for BQ to VCF pipeline. Pull #493 web-flow travis-ci pending completion   set done
1740 preprocessor address the comments Pull #490 web-flow travis-ci pending completion   set done
1739 pysam Introduce PySam as an alternative parsing library. Pull #491 web-flow travis-ci pending completion   set done
1737 preprocessor Add support of BGZF for preprocessor Pull #490 web-flow travis-ci pending completion   set done
1736 auto_flags_two Add threshold logic to adjust flags for certain input sizes. - Extracts manually supplied flags from argv. - Uses supplied args and input size estimations to check whether flags should be enabled or not. Pull #489 web-flow travis-ci pending completion   set done
1735 master Add automatic flag-defaulting functionality. (#480) Create infrastructure to adding automatic flag selection and manipulation. - Add "Experiment" feature to flags to allow enabling/disabling certain workflows. - Add infrastructure to read... push web-flow travis-ci pending completion   set done
1734 auto_flags Address 5th iteration of comments. Pull #480 web-flow travis-ci pending completion   set done
1733 master Add support for bgzf. (#484) Add support for reading of bgzf. - If the index file is not present, use fusion break to speed up the pipeline. - Otherwise, parse the index file and read the bgzf in parallel. - The BGZF can end with .gz or .bgz, ... push web-flow travis-ci pending completion   set done
1732 auto_flags Address 5th iteration of comments. Pull #480 web-flow travis-ci pending completion   set done
1731 bq2 Merge branch 'master' into bq2 Pull #484 web-flow travis-ci pending completion   set done
1730 master Beam has an update and changes the dependencies on the version of google-cloud-core. (#488) push web-flow travis-ci pending completion   set done
1729 package Beam has an update and changes the dependencies on the version of google-cloud-core. Pull #488 web-flow travis-ci pending completion   set done
1727 bq2 Merge branch 'master' into bq2 Pull #484 web-flow travis-ci pending completion   set done