googlegenomics / gcp-variant-transforms / 1761

Builds Branch Commit Type Ran Committer Via Coverage
1761 beam_sink Modify BigQuery write mechanism to use the new WriteToBigQuery PTransform, and remove num_bigquery_write_shards flag. Previously, issue #199 forced us to use a hack to shard the variants before they are written to BigQuery, which negatively affec... Pull #499 web-flow travis-ci pending completion   set done
1760 beam_sink Modify BigQuery write mechanism to use the new WriteToBigQuery PTransform, and remove num_bigquery_write_shards flag. Previously, issue #199 forced us to use a hack to shard the variants before they are written to BigQuery, which negatively affec... Pull #499 web-flow travis-ci pending completion   set done
1759 v0.8.0 Update default annotation source. (#498) The vep cache and vep image are copied to cloud-lifesciences project. Change the default cache and vep image to point to cloud-lifesciences project. push web-flow travis-ci pending completion   set done
1758 master Update default annotation source. (#498) The vep cache and vep image are copied to cloud-lifesciences project. Change the default cache and vep image to point to cloud-lifesciences project. push web-flow travis-ci pending completion   set done
1757 image Update default annotation source. Pull #498 web-flow travis-ci pending completion   set done
1756 pysam Adjust to the second iteration of comments. Pull #491 web-flow travis-ci pending completion   set done
1755 master Update the version number (#497) push web-flow travis-ci pending completion   set done
1754 release Update the version number Pull #497 web-flow travis-ci pending completion   set done
1753 master Update default docker images to cloud-lifesciences (#496) The existing images in gcp-variant-transforms have been copied to cloud-lifesciences The future releases will publish in cloud-lifesciences. push web-flow travis-ci pending completion   set done
1752 gcr Update default docker images to cloud-lifesciences Pull #496 web-flow travis-ci pending completion   set done
1751 sample-info address the comments Pull #495 web-flow travis-ci pending completion   set done
1750 sample-info Create sample info table. Use flag --create_sample_info_table to create this table. The table contains sample id and the file path. Pull #495 web-flow travis-ci pending completion   set done
1749 pysam Adjust to first iteration of comments. Pull #491 web-flow travis-ci pending completion   set done
1748 schema Create a sample info table - Use flag --create_sample_info_table to create this table. - The table contains sample id and the file path. - The sample id is also added into the variant record. - Ignore sample id column for BQ to VCF pipeline. Pull #493 web-flow travis-ci pending completion   set done
1746 master Add support of BGZF for preprocessor (#490) Add support of BGZF for preprocessor. push web-flow travis-ci pending completion   set done