googlegenomics / gcp-variant-transforms / 1708

89%

master: 89%

Pull #484

travis-ci

Add support for reading of bgzf.
If the index file is not present, use fusion break to speed up the
pipeline.
Otherwise, parse the index file and read the bgzf in parallel.
The BGZF can end with .gz or .bgz, and must be in GCS.
The index file is required to be in the same path as bgzf ending with .tbi.
Only PyVCF Parser is supported.

277 of 277 new or added lines in 8 files covered. (100.0%)

7213 of 8275 relevant lines covered (87.17%)

0.87 hits per line