pirl-unc / hitlist
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coverage: 80.498% (+0.06%) from 80.435%
Relevant lines Covered
7343 RELEVANT LINES 5911 COVERED LINES
0.8 HITS PER LINE
Source Files on main

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
27842275440 main Subtle ANSI coloring for --help (cli_help.SubtleHelpFormatter) (#346) Adds hitlist.cli_help with a SubtleHelpFormatter (subcommand names in cyan, section headings in bold) and a ColorArgumentParser that defaults to it. Because add_subparsers uses... push web-flow github
80.5
27800559606 main Friendlier CLI + accurate docs + curated top-level API (#345) Friendliness: - Stale deprecation targets: every "Run: hitlist data build" / "data fetch-proteomes" error + help string (qc, observations, mappings, builder, cli, bulk_proteomics) ... push web-flow github
80.44
27799766194 main Fix silent-wrong-result bugs in the data/observations layer (#344) Six correctness fixes surfaced by a holistic review (all reproduced, regression tests added): - observations: mhc_allele_in_set was silently skipped when the caller's columns= ... push web-flow github
80.37
27790016011 main Auto-fetch IEDB/CEDAR; add reusable VersionedDatasetRegistry (#343) IEDB/CEDAR: - Move iedb/cedar from MANUAL_DATASETS to FETCHABLE_DATASETS. The downloader.php endpoints serve the zip directly (no enforced login), so there's no technical rea... push web-flow github
80.32
27783875082 main Add progress bar + cache status to downloads; expose reusable download_to_file (closes #341) (#342) The core streaming download (_download_to_file) showed no progress despite tqdm already being a dependency, and cache-hit messaging was ad-hoc acr... push web-flow github
80.04
27364016973 main v1.41.2: rewrite docs for accuracy + add a curation-process overview (#340) The mkdocs site had drifted badly from the code and didn't explain the curation pipeline as a whole: - pmid-curation.md taught the DEPRECATED YAML schema the loader acti... push web-flow github
79.92
27360328059 main v1.41.1: clarify and relocate the curation-coverage table in README (#339) The "What's curated" table sat at the very top, right under the intro, before the reader had any sense of the dataset's scale. Move it below the index-stats section (so th... push web-flow github
79.92
27359346616 main v1.41.0: add `export ms`/`peptide-summary` + serotype broadening (reimplements #142) (#338) Reimplements the high-value parts of the stale draft #142 cleanly against current main (that branch was ~150 commits behind and unmergeable). #142 is clos... push web-flow github
79.92
27345169321 main v1.40.2: remove 9 low-value tests that exercise no hitlist code (#337) An audit of the ~19k-line test suite surfaced 9 tests that either run zero production code (they test third-party libraries) or assert nothing a sibling test doesn't already c... push web-flow github
79.79
27321728378 main v1.40.1: ship packaged ENSG→symbol map; fill 98% of blank gene_names offline (#336) * v1.40.1: ship packaged ENSG→symbol map; fill 98% of blank gene_names offline The line_expression gene_name fill previously relied entirely on a live pyensembl ... push web-flow github
79.79
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