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• scanner-v2
• add-load-all-evidence
• add-parquet-export-test
• add-refs-aggregator-20260420
• align-version-with-pypi
• allele-resolution
• attribution-per-donor-rows
• audit-pmid-overrides
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• builder-memory-reduction
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• curate-batch-2
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• feat/allele-bag-expansion-137
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• feat/assay-iri-evidence-row-id
• feat/binding-response-measured-stacked
• feat/build-top-level
• feat/bulk-proteomics-n-replicates-possible
• feat/class-label-severity-tiers
• feat/condition-categories
• feat/curate-shapiro-2025
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• feat/engineered-mhc-flag
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• feat/export-cleanup
• feat/export-provenance
• feat/gomez-raji-plasma
• feat/instrument-category-and-gomez-zepeda
• feat/line-expression-anchors
• feat/line-expression-cache
• feat/list-args-space-separated
• feat/maptac-dp-dq-match
• feat/normalize-and-class-suspect
• feat/observations-export
• feat/pmhc-binder-classification
• feat/pmhc-flat-and-optional
• feat/pmhc-query-and-toplevel-reshuffle
• feat/pmhc-sample-paired
• feat/pmhc-serotype-expansion
• feat/ptm-aware-peptides
• feat/qc-plan-roadmap
• feat/qc-proteome-coverage
• feat/qc-top-level
• feat/quantitative-binding-fields
• feat/register-aav-proteomes
• feat/register-mtb-plasmodium-proteomes
• feat/rename-map-source-proteins
• feat/report-from-index
• feat/severity-tiers-in-curation-plan
• feat/severity-tiers-in-qc-and-cli
• feat/training-export-136
• feat/transcript-aware-mappings
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• fix-allele-resolution-categorical-fillna
• fix-alpizar-2017-split-b-alleles
• fix-chen-2020-hela-abc-ko
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• fix-ebv-lcl-direct-ex-vivo
• fix-hla-only-filter
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• fix-pandas-categorical-warnings
• fix-pmid-arrow-conversion
• fix-sarango-2022-precision
• fix-trolle-2016-split-721-221-transfectants
• fix-weingarten-gabbay-2021-no-hbec
• fix/255-download-timeout
• fix/audit-19-remaining
• fix/c1r-allele-curation
• fix/class-ii-implausible-45
• fix/class-ii-implausible-threshold
• fix/cross-reference-class-only-pmids
• fix/derived-column-passthrough
• fix/multi-allele-genotype-tokenization
• fix/per-sample-mhc-curation
• fix/pmhc-progress-wording
• fix/pmid-curation-audits-128-132
• fix/proteome-cache-bounded
• fix/report-keyerror-and-cli-help
• fix/run-all-include-proteome-coverage
• fix/sample-resolver-tiebreak
• fix/scanner-close-csv-files
• fix/severity-tier-ptm-aware
• ingest-abelin-2019-maptac
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• ingest-ccle-bulk-proteomics
• ingest-strazar-2023-hla2
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• issue-104-108-digest-and-bounds
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• issue-110-proteome-index-memory
• issue-117-summary-from-indices
• issue-119-export-progress
• issue-12-human-51-100
• issue-121-118-normalize-and-lengths
• issue-122-short-mhc2-filter
• issue-8-nonclassical-hla
• issue-85-scanner-perf
• issue-86-proteome-index-cache
• issue-93-remove-hla-filter
• issue-98-fractionation-ph
• issue-99-proteome-kmer-set
• main
• mono-allelic-detection
• mono-allelic-method
• obliterate-legacy-index-cache
• parallelize-mappings
• per-transfectant-splits
• perf/250-vectorized-kmer-index
• perf/262-arrow-xdist-cache
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• perf/test-speed
• perf/test-suite-integration-marker
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• pin-mhcgnomes
• pmhc-filter-flags
• pmhc-group-by-species
• predictor-multi-allele-narrowing
• profile-build-pipeline
• proteome-cache-followups
• qc/discrepancies-report
• refactor/258-rename-pmhc-helpers
• rename-proteome-label
• retire-human-only
• retro-allele-predictor
• sarkizova-monoallelic-recovery-45
• serotype-mapping
• split-gene-mapping-from-observations
• test/supplementary-build-e2e
• unified-observations
• update-readme-1.10
• upgrade-mhc-unknown
• vectorize-export-discriminator-loop

Build # 24033087470

Build Type

Pull #5

github

Committed by web-flow

Commit Message

Merge 4450450dc into e1b6edc70

Pull Request Pull Request #5: Cache mhcgnomes, add mhc_species, fix 721.221 mono-allelic detection

Coverage Stats

376 of 992 relevant lines covered (37.9%)

0.38 hits per line