27790016011
80%

Ran 18 Jun 2026 09:24PM UTC

Jobs 1

Files 29

Run time 1min

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Committed 18 Jun 2026 09:19PM UTC coverage: 80.324% (+0.3%) from 80.039%

Build # 27790016011

Build Type

push

github

Committed by

web-flow

Commit Message

Auto-fetch IEDB/CEDAR; add reusable VersionedDatasetRegistry (#343)

IEDB/CEDAR:
- Move iedb/cedar from MANUAL_DATASETS to FETCHABLE_DATASETS. The downloader.php
  endpoints serve the zip directly (no enforced login), so there's no technical
  reason to require a manual download. fetch() now streams + unzips them.
- fetch() routes through download_to_file(decompress=True) instead of the bare
  _download_to_file: unzips the IEDB/CEDAR .zip->.csv, a no-op for the viral
  .fasta entries, and every `hitlist data fetch` gains the progress bar.
- A `terms` URL on a fetchable dataset prints a usage/citation notice on fetch,
  preserving the terms-of-use nudge that the manual step used to imply.

VersionedDatasetRegistry:
- New reusable class (+ VersionedDatasetError) over download_to_file for
  version-pinned datasets: name->spec registry, per-version URLs with a pinned
  default, a JSON provenance manifest (sha256/bytes/url/downloaded_at), and a
  caller-supplied cache dir. Lifts the machinery tsarina's reference_data.py
  re-implements so it lives in one place; consumers register their own defs +
  cache namespace. On-disk layout matches tsarina's exactly (no migration).

Bumps 1.42.0 -> 1.43.0 (new public API).

Coverage Stats

5846 of 7278 relevant lines covered (80.32%)

0.8 hits per line

Coverage Regressions

Lines	Coverage	∆	File
98	71.99	6.01%	downloads.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	27790016011.1	18 Jun 2026 09:24PM UTC	29	80.32	GitHub Action Run

pirl-unc / hitlist / 27790016011
80%

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pirl-unc / hitlist / 27790016011 80%

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