pirl-unc / hitlist / 25030468362

Builds Branch Commit Type Ran Committer Via Coverage
25030468362 main v1.25.0: Add hitlist qc top-level command for corpus + curation diagnostics (#167) First step of the CLI refactor. Adds a new top-level ``qc`` command with three orthogonal sub-checks: - ``hitlist qc resolution`` — histogram of (mhc_class,... push web-flow github
61.19
25030035055 feat/qc-top-level Merge cb27433b9 into 42d9db8c1 Pull #167 web-flow github
61.19
25029707008 main v1.24.2: List-style CLI args accept space-separated values (#136 follow-up) (#166) Pre-fix the list-style CLI flags (--mhc-allele, --gene, --gene-name, --serotype, --cell-line, --assay-method, etc.) only accepted repeated flags ("--gene NRAS --ge... push web-flow github
61.38
25029254902 feat/list-args-space-separated Merge 62a6191df into 04e8d3ba5 Pull #166 web-flow github
61.38
25019666995 main v1.24.1: Rename explode_mappings → map_source_proteins (#165) The kwarg now reads as what the join actually does — map peptides back to their source proteins (one row per peptide-occurrence, carrying protein_id / gene_name / gene_id / transcript_... push web-flow github
61.35
25018982920 feat/rename-map-source-proteins Merge 4ceb07638 into 65d2b1c5f Pull #165 web-flow github
61.35
25015426653 main v1.24.0: Thread allele-bag filters through generate_training_table (#136) (#164) #137 added mhc_allele_in_bag / mhc_allele_provenance filters to generate_observations_table and generate_binding_table, but the unified training export silently drop... push web-flow github
61.32
25014753468 feat/training-export-136 Merge 266c532f3 into 607929056 Pull #164 web-flow github
61.32
25011520130 main v1.23.0: Exact-allele bag expansion + provenance for class-only rows (#137) (#163) Adds three columns to every observation row so multi-allelic / class-only MS rows become usable training data instead of being dropped: - mhc_allele_set: ";"-join... push web-flow github
61.23
25010212582 feat/allele-bag-expansion-137 Merge 5767a72a2 into eef95f583 Pull #163 web-flow github
61.23
25003665076 main v1.22.0: response_measured field in binding-assay schema (#135) (#162) * v1.22.0: Add response_measured to binding-assay schema (#135) Issue #135 asked for the IEDB/CEDAR "Assay | Response measured" field to be preserved alongside the existing q... push web-flow github
60.71
24997144378 feat/binding-response-measured-stacked Merge 6f6401cfa into eace75655 Pull #162 web-flow github
60.71
24996999897 main v1.21.0: PMID curation audits (#128, #129, #130, #131, #132) (#160) * v1.21.0: PMID curation audits (#128, #129, #130, #131, #132) Resolves a cluster of per-PMID curation issues where the shipped observations.parquet either misclassified arms or... push web-flow github
60.67
24996977654 feat/binding-response-measured-stacked Merge 1af6896b9 into a425bceca Pull #161 web-flow github
60.71
24996634961 fix/pmid-curation-audits-128-132 Merge a425bceca into 1f7bcbda6 Pull #160 web-flow github
60.67