pirl-unc / hitlist / 27842275440

Builds Branch Commit Type Ran Committer Via Coverage
27842275440 main Subtle ANSI coloring for --help (cli_help.SubtleHelpFormatter) (#346) Adds hitlist.cli_help with a SubtleHelpFormatter (subcommand names in cyan, section headings in bold) and a ColorArgumentParser that defaults to it. Because add_subparsers uses... push web-flow github
80.5
27839676262 cli-help-color Merge 1eca6430b into 81eef49f6 Pull #346 web-flow github
80.53
27800559606 main Friendlier CLI + accurate docs + curated top-level API (#345) Friendliness: - Stale deprecation targets: every "Run: hitlist data build" / "data fetch-proteomes" error + help string (qc, observations, mappings, builder, cli, bulk_proteomics) ... push web-flow github
80.44
27800398117 friendliness-and-docs Merge b1ebb5194 into 1b695987c Pull #345 web-flow github
80.44
27799766194 main Fix silent-wrong-result bugs in the data/observations layer (#344) Six correctness fixes surfaced by a holistic review (all reproduced, regression tests added): - observations: mhc_allele_in_set was silently skipped when the caller's columns= ... push web-flow github
80.37
27799593533 correctness-fixes Merge 105205e24 into f2859918f Pull #344 web-flow github
80.37
27790016011 main Auto-fetch IEDB/CEDAR; add reusable VersionedDatasetRegistry (#343) IEDB/CEDAR: - Move iedb/cedar from MANUAL_DATASETS to FETCHABLE_DATASETS. The downloader.php endpoints serve the zip directly (no enforced login), so there's no technical rea... push web-flow github
80.32
27789391371 versioned-datasets-iedb-autofetch Merge 94633aafe into a953ad42a Pull #343 web-flow github
80.32
27783875082 main Add progress bar + cache status to downloads; expose reusable download_to_file (closes #341) (#342) The core streaming download (_download_to_file) showed no progress despite tqdm already being a dependency, and cache-hit messaging was ad-hoc acr... push web-flow github
80.04
27777451563 download-progress-cache-status Merge a125ccb4a into 6aef86416 Pull #342 web-flow github
80.04
27364016973 main v1.41.2: rewrite docs for accuracy + add a curation-process overview (#340) The mkdocs site had drifted badly from the code and didn't explain the curation pipeline as a whole: - pmid-curation.md taught the DEPRECATED YAML schema the loader acti... push web-flow github
79.92
27363711666 docs-curation-rewrite Merge 823dbf455 into a8f6472ec Pull #340 web-flow github
79.92
27360328059 main v1.41.1: clarify and relocate the curation-coverage table in README (#339) The "What's curated" table sat at the very top, right under the intro, before the reader had any sense of the dataset's scale. Move it below the index-stats section (so th... push web-flow github
79.92
27359984890 readme-curation-table Merge b76be9130 into efdb3faf3 Pull #339 web-flow github
79.92
27359346616 main v1.41.0: add `export ms`/`peptide-summary` + serotype broadening (reimplements #142) (#338) Reimplements the high-value parts of the stale draft #142 cleanly against current main (that branch was ~150 commits behind and unmergeable). #142 is clos... push web-flow github
79.92