pirl-unc / hitlist / 26997363926

Builds Branch Commit Type Ran Committer Via Coverage
26997363926 main v1.30.65: CI coverage for the peptide_mappings build, offline (#176/#63) (#276) Closes the last 'not covered in CI' gap from #275: the proteome-dependent mapping build now runs in CI with no network. fetch_species_proteome uses an already-cached... push web-flow github
80.37
26996764408 ci/mappings-coverage Merge 3f5a1e043 into f7f2207fd Pull #276 web-flow github
80.37
26995946149 main v1.30.64: CI build smoke test from packaged data (#176/#63) (#275) Answers 'is there a smaller version we can ship for CI?' — turns out we don't need to ship the 15 GB IEDB/CEDAR sources at all. build_observations runs the full build *orchestrati... push web-flow github
78.73
26995360077 ci/build-smoke-test Merge 372d91776 into 0db646af0 Pull #275 web-flow github
78.73
26994604019 main v1.30.63: cap integration-test workers in CI to avoid OOM (#272 follow-up) (#274) Seeding the ci-corpus-v1 release exposed a bug in the corpus mechanism: once the corpus is present, the 3.11 job ran the integration suite under 'pytest -n auto' (4... push web-flow github
77.0
26994036830 ci/corpus-oom-fix Merge c9ec79e0b into 74e64c754 Pull #274 web-flow github
77.0
26992506673 main v1.30.62: int-encoded columnar k-mer index (#250, foundation for #248) (#273) Replace ProteomeIndex's dict[str, int|np.ndarray] k-mer index with a per-length columnar structure (_PackedIndex): each k-mer packs into a single uint64 code (5 bits/re... push web-flow github
76.65
26992085347 perf/250-vectorized-kmer-index Merge d4a6d9ddc into 0ff827735 Pull #273 web-flow github
76.65
26977481678 main v1.30.61: run integration suite in CI via prebuilt-corpus cache (#272) CI couldn't run the ~20 integration tests (or exercise the #262 Arrow mmap fixture) because the built observations corpus isn't present — full_observations_df self-skips when ... push web-flow github
76.83
26976716482 ci/corpus-cache Merge b5f9587da into c697c18b2 Pull #272 web-flow github
76.83
26975890813 main v1.30.60: share full_observations_df via Arrow IPC mmap, not pickle (#262) (#271) * v1.30.60: share full_observations_df via Arrow IPC mmap, not pickle (#262) The full_observations_df xdist fixture was shared via an on-disk pickle: one worker bu... push web-flow github
76.83
26975232560 perf/262-arrow-xdist-cache Merge 2580e0268 into 9a5c56a47 Pull #271 web-flow github
76.83
26974803706 perf/262-arrow-xdist-cache Merge 67283f4a7 into 9a5c56a47 Pull #271 web-flow github
76.83
26974356414 main v1.30.59: faster test suite — drop pytest -v + cache bulk parquet reads (#270) Two independent test/CI speedups: 1. Remove '-v' from pytest addopts. The per-test verbose listing added log noise (and a little I/O) to every local + CI run witho... push web-flow github
76.83
26973766970 perf/test-speed Merge 225fe0b3e into 09f17e42f Pull #270 web-flow github
76.83